RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TMOD2Q9NZR1 351 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 PAPPA2Q9BXP8 1791 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 FOXN1O15353 648 aa18.03■□□□□ 0.48
USP4-212ENST00000486549 CYP2E1P05181 493 aaPredicted RBP18.03■□□□□ 0.48
USP4-212ENST00000486549 NF2P35240 595 aa18.03■□□□□ 0.48
USP4-212ENST00000486549 TNFAIP1Q13829 316 aa18.03■□□□□ 0.48
USP4-212ENST00000486549 TTLL12Q14166 644 aaPredicted RBP18.03■□□□□ 0.48
USP4-212ENST00000486549 RASA3Q14644 834 aa18.03■□□□□ 0.48
USP4-212ENST00000486549 TNNI2P48788 182 aa18.02■□□□□ 0.48
USP4-212ENST00000486549 PRKG1Q13976 671 aa18.02■□□□□ 0.48
USP4-212ENST00000486549 SLF2Q8IX21 1173 aa18.02■□□□□ 0.48
USP4-212ENST00000486549 PPP2R3BQ9Y5P8 575 aa18.02■□□□□ 0.48
USP4-212ENST00000486549 MROH7-TTC4A0A0A0MT08 1334 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 AAMPQ13685 434 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 RGMBQ6NW40 437 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 CDC42EP5Q6NZY7 148 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 MOB2Q70IA6 237 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 ZNF384Q8TF68 577 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 NSUN4Q96CB9 384 aaKnown RBP18.01■□□□□ 0.47
USP4-212ENST00000486549 DNAJC2Q99543 621 aaKnown RBP18.01■□□□□ 0.47
USP4-212ENST00000486549 PIH1D3Q9NQM4 214 aaKnown RBP18.01■□□□□ 0.47
USP4-212ENST00000486549 USP40Q9NVE5 1235 aa18.01■□□□□ 0.47
USP4-212ENST00000486549 GAKO14976 1311 aa18■□□□□ 0.47
USP4-212ENST00000486549 SSC5DA1L4H1 1573 aa18■□□□□ 0.47
USP4-212ENST00000486549 DOCK2Q92608 1830 aa18■□□□□ 0.47
USP4-212ENST00000486549 BTDP43251 543 aa18■□□□□ 0.47
USP4-212ENST00000486549 GSTO1P78417 241 aa18■□□□□ 0.47
USP4-212ENST00000486549 NBPF12Q5TAG4 269 aaPredicted RBP18■□□□□ 0.47
USP4-212ENST00000486549 REM2Q8IYK8 340 aaPredicted RBP18■□□□□ 0.47
USP4-212ENST00000486549 TMEM39BQ9GZU3 492 aa18■□□□□ 0.47
USP4-212ENST00000486549 FZD1Q9UP38 647 aa18■□□□□ 0.47
USP4-212ENST00000486549 AK9Q5TCS8 1911 aa18■□□□□ 0.47
USP4-212ENST00000486549 IDH1O75874 414 aaKnown RBP17.99■□□□□ 0.47
USP4-212ENST00000486549 NAA16Q6N069 864 aaPredicted RBP17.99■□□□□ 0.47
USP4-212ENST00000486549 CDAN1Q8IWY9 1227 aa17.99■□□□□ 0.47
USP4-212ENST00000486549 ANTXR1Q9H6X2 564 aa17.99■□□□□ 0.47
USP4-212ENST00000486549 THSD7BQ9C0I4 1608 aa17.98■□□□□ 0.47
USP4-212ENST00000486549 UBE2Q2LH0YL09 131 aa17.98■□□□□ 0.47
USP4-212ENST00000486549 LDHCP07864 332 aa17.98■□□□□ 0.47
USP4-212ENST00000486549 ZNF157P51786 506 aaPredicted RBP17.98■□□□□ 0.47
USP4-212ENST00000486549 HDAC1Q13547 482 aaPredicted RBP17.98■□□□□ 0.47
USP4-212ENST00000486549 SUPT20HL1Q3ZLR7 823 aa17.98■□□□□ 0.47
USP4-212ENST00000486549 BOLA2Q9H3K6 86 aa17.98■□□□□ 0.47
USP4-212ENST00000486549 GOLIM4O00461 696 aa17.97■□□□□ 0.47
USP4-212ENST00000486549 AOC2O75106 756 aa17.97■□□□□ 0.47
USP4-212ENST00000486549 LBX1P52954 281 aa17.97■□□□□ 0.47
USP4-212ENST00000486549 TCP10Q12799 353 aa17.97■□□□□ 0.47
USP4-212ENST00000486549 NFIAQ12857 509 aa17.97■□□□□ 0.47
USP4-212ENST00000486549 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.97■□□□□ 0.47
USP4-212ENST00000486549 FAM163AQ96GL9 167 aaPredicted RBP17.97■□□□□ 0.47
USP4-212ENST00000486549 NOL10Q9BSC4 688 aaKnown RBP17.97■□□□□ 0.47
USP4-212ENST00000486549 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.97■□□□□ 0.47
USP4-212ENST00000486549 ZBTB47Q9UFB7 747 aaPredicted RBP17.97■□□□□ 0.47
USP4-212ENST00000486549 ANGEL1Q9UNK9 670 aaKnown RBP17.97■□□□□ 0.47
USP4-212ENST00000486549 GPR75-ASB3A0A0A6YYF3 556 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 HSPA8P11142 646 aaKnown RBP17.96■□□□□ 0.47
USP4-212ENST00000486549 ATP5JP18859 108 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 ANKRD45Q5TZF3 282 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 FKBP1CQ5VVH2 108 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 TSHZ3Q63HK5 1081 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 ARMC9Q7Z3E5 817 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 FAM83AQ86UY5 434 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 GCC1Q96CN9 775 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 EDC3Q96F86 508 aaKnown RBP17.96■□□□□ 0.47
USP4-212ENST00000486549 TEPSINQ96N21 525 aa17.96■□□□□ 0.47
USP4-212ENST00000486549 RWDD1Q9H446 243 aaPredicted RBP17.96■□□□□ 0.47
USP4-212ENST00000486549 OTOFQ9HC10 1997 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 PPP1R12BO60237 982 aaPredicted RBP17.95■□□□□ 0.46
USP4-212ENST00000486549 MAP3K12Q12852 859 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 PICALMQ13492 652 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 TTF1Q15361 905 aaPredicted RBP17.95■□□□□ 0.46
USP4-212ENST00000486549 ADGRA1Q86SQ6 560 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 MAGEB6Q8N7X4 407 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 GPATCH3Q96I76 525 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 ECHDC1Q9NTX5 307 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 AATFQ9NY61 560 aaKnown RBP eCLIP17.95■□□□□ 0.46
USP4-212ENST00000486549 FAM198AQ9UFP1 575 aa17.95■□□□□ 0.46
USP4-212ENST00000486549 CYP7A1P22680 504 aa17.94■□□□□ 0.46
USP4-212ENST00000486549 RGS3P49796 1198 aa17.94■□□□□ 0.46
USP4-212ENST00000486549 FAM151AQ8WW52 585 aa17.94■□□□□ 0.46
USP4-212ENST00000486549 PAG1Q9NWQ8 432 aa17.94■□□□□ 0.46
USP4-212ENST00000486549 RFX7Q2KHR2 1363 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 RPAP1Q9BWH6 1393 aaPredicted RBP17.93■□□□□ 0.46
USP4-212ENST00000486549 CDK5RAP2Q96SN8 1893 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 IGHDP01880 384 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 RHBDL3P58872 404 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 B4GALNT3Q6L9W6 998 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 OTUD7AQ8TE49 926 aaPredicted RBP17.93■□□□□ 0.46
USP4-212ENST00000486549 HAUS7Q99871 368 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 MYH7P12883 1935 aa17.93■□□□□ 0.46
USP4-212ENST00000486549 WDHD1O75717 1129 aaPredicted RBP17.92■□□□□ 0.46
USP4-212ENST00000486549 BAG3O95817 575 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 SLC10A3P09131 477 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 IREB2P48200 963 aaKnown RBP17.92■□□□□ 0.46
USP4-212ENST00000486549 RASAL3Q86YV0 1011 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 ZFPM1Q8IX07 1006 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 TEX11Q8IYF3 940 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 MIGA1Q8NAN2 632 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 SH3RF3Q8TEJ3 882 aaPredicted RBP17.92■□□□□ 0.46
USP4-212ENST00000486549 IDI2Q9BXS1 227 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms