RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 IGSF1Q8N6C5 1336 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 RGPD8O14715 1765 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-219ENST00000469439 NHSL1Q5SYE7 1610 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 ADARB2-AS1A8MUL3 147 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 E9PSI1 815 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 PRKAR2BP31323 418 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 SEC13P55735 322 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 NFE2L2Q16236 605 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 CRTC2Q53ET0 693 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-219ENST00000469439 ALDH16A1Q8IZ83 802 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 TCP11L2Q8N4U5 519 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 ZNF280CQ8ND82 737 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 DDX17Q92841 729 aaKnown RBP7.54□□□□□ -1.2
SYNE1-219ENST00000469439 NGLY1Q96IV0 654 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 SUSD3Q96L08 255 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 C2orf49Q9BVC5 232 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-219ENST00000469439 PPP1R12CQ9BZL4 782 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 BABAM1Q9NWV8 329 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 PIK3C2AO00443 1686 aa7.54□□□□□ -1.2
SYNE1-219ENST00000469439 IL16Q14005 1332 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 TRPM3Q9HCF6 1732 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-219ENST00000469439 CT47B1P0C2W7 299 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-219ENST00000469439 BAG6P46379 1132 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 RIPK4P57078 832 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 SPEM2Q0P670 501 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 PTK7Q13308 1070 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 ZNF428Q96B54 188 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 LTV1Q96GA3 475 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-219ENST00000469439 CALR3Q96L12 384 aaKnown RBP7.53□□□□□ -1.2
SYNE1-219ENST00000469439 YTHDC1Q96MU7 727 aaKnown RBP7.53□□□□□ -1.2
SYNE1-219ENST00000469439 KDRP35968 1356 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 ALS2Q96Q42 1657 aa7.53□□□□□ -1.2
SYNE1-219ENST00000469439 NFAT5O94916 1531 aa7.52□□□□□ -1.2
SYNE1-219ENST00000469439 APAF1O14727 1248 aa7.52□□□□□ -1.21
SYNE1-219ENST00000469439 TMPOP42166 694 aaKnown RBP7.52□□□□□ -1.21
SYNE1-219ENST00000469439 GNAI1P63096 354 aa7.52□□□□□ -1.21
SYNE1-219ENST00000469439 LARP1Q6PKG0 1096 aaKnown RBP7.52□□□□□ -1.21
SYNE1-219ENST00000469439 CD163Q86VB7 1156 aa7.52□□□□□ -1.21
SYNE1-219ENST00000469439 SCG3Q8WXD2 468 aaKnown RBP7.52□□□□□ -1.21
SYNE1-219ENST00000469439 CEP63Q96MT8 703 aa7.52□□□□□ -1.21
SYNE1-219ENST00000469439 BTG4Q9NY30 223 aa7.52□□□□□ -1.21
SYNE1-219ENST00000469439 PHRF1Q9P1Y6 1649 aaKnown RBP7.52□□□□□ -1.21
SYNE1-219ENST00000469439 SOS1Q07889 1333 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-219ENST00000469439 FAM83GA6ND36 823 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 FAM196BA6NMK8 535 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 GNAT3A8MTJ3 354 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 C1QTNF9BB2RNN3 333 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L15C9J2P7 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L10C9JJH3 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L13C9JLJ4 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L12C9JPN9 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L11C9JVI0 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L21D6R901 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L18D6R9N7 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L22D6RA61 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L17D6RBQ6 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L19D6RCP7 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L20D6RJB6 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 HMOX1P09601 288 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 IL2RBP14784 551 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 ALAS2P22557 587 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 CHRNA4P43681 627 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 USP17L24Q0WX57 530 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 CCDC184Q52MB2 194 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 AKAP4Q5JQC9 854 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 ZNF772Q68DY9 489 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-219ENST00000469439 RAB44Q7Z6P3 723 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-219ENST00000469439 UNC5CLQ8IV45 518 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-219ENST00000469439 PLEKHF1Q96S99 279 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 KCNH4Q9UQ05 1017 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 CCDC9Q9Y3X0 531 aaKnown RBP7.51□□□□□ -1.21
SYNE1-219ENST00000469439 PHLPP1O60346 1717 aa7.51□□□□□ -1.21
SYNE1-219ENST00000469439 EXOC5O00471 708 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 HSPA1LP34931 641 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 TEFQ10587 303 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 DPYDQ12882 1025 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 CHRNA2Q15822 529 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 HIF1AQ16665 826 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 BTLAQ7Z6A9 289 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 IFNL2Q8IZJ0 200 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 PLVAPQ9BX97 442 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 TRPC5Q9UL62 973 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-219ENST00000469439 STARD13Q9Y3M8 1113 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 CRB1P82279 1406 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 PCDH11XQ9BZA7 1347 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 PCDH11YQ9BZA8 1340 aa7.5□□□□□ -1.21
SYNE1-219ENST00000469439 COL3A1P02461 1466 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-219ENST00000469439 COL22A1Q8NFW1 1626 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-219ENST00000469439 NEFLP07196 543 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 IGFBP4P22692 258 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 FBLN1P23142 703 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 ADH7P40394 386 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 COL9A3Q14050 684 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-219ENST00000469439 VPS72Q15906 364 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 NBPF6Q5VWK0 638 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 IER5Q5VY09 327 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 ANKMY2Q8IV38 441 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 CCDC146Q8IYE0 955 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 ZCRB1Q8TBF4 217 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms