RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ZNRF3Q9ULT6 936 aa7.36□□□□□ -1.23
HMGB1-207ENST00000468384 ADH1BP00325 375 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 PROCP04070 461 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 PRKG1Q13976 671 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 TSR1Q2NL82 804 aaKnown RBP7.35□□□□□ -1.23
HMGB1-207ENST00000468384 SWT1Q5T5J6 900 aaKnown RBP7.35□□□□□ -1.23
HMGB1-207ENST00000468384 ARHGAP39Q9C0H5 1083 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 SLC6A16Q9GZN6 736 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 CD320Q9NPF0 282 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 BIN2Q9UBW5 565 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-207ENST00000468384 DMXL1Q9Y485 3027 aa7.35□□□□□ -1.23
HMGB1-207ENST00000468384 MYO18BQ8IUG5 2567 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 RPIAP49247 311 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 UBXN2AP68543 259 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 TTLL12Q14166 644 aaPredicted RBP7.34□□□□□ -1.23
HMGB1-207ENST00000468384 SHHQ15465 462 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 TBC1D9BQ66K14 1250 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 OTUD7BQ6GQQ9 843 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 CNBD1Q8NA66 436 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 SNIP1Q8TAD8 396 aaKnown RBP7.34□□□□□ -1.23
HMGB1-207ENST00000468384 CDCA7LQ96GN5 454 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 GGA3Q9NZ52 723 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 RIPOR2Q9Y4F9 1068 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 DNAH12Q6ZR08 3092 aa7.34□□□□□ -1.23
HMGB1-207ENST00000468384 TONSLQ96HA7 1378 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 COL3A1P02461 1466 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-207ENST00000468384 NPHP1O15259 732 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 PPIP5K2O43314 1243 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 KRT38O76015 456 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 GNRH1P01148 92 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 ST5P78524 1137 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 PTPN12Q05209 780 aaKnown RBP7.33□□□□□ -1.24
HMGB1-207ENST00000468384 TNIP1Q15025 636 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 RBM26Q5T8P6 1007 aaKnown RBP7.33□□□□□ -1.24
HMGB1-207ENST00000468384 DEFB118Q96PH6 123 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 LBHD1Q9BQE6 289 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-207ENST00000468384 EMILIN3Q9NT22 766 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 FAM86C1Q9NVL1 165 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 ASPMQ8IZT6 3477 aa7.33□□□□□ -1.24
HMGB1-207ENST00000468384 ASTN2O75129 1339 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-207ENST00000468384 RAD17O75943 681 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 ALADP13716 330 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 KRT76Q01546 638 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 AOC3Q16853 763 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 C9orf50Q5SZB4 431 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 CC2D2BQ6DHV5 1058 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 HOMEZQ8IX15 550 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 DMDP11532 3685 aa7.32□□□□□ -1.24
HMGB1-207ENST00000468384 RGPD2P0DJD1 1756 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 PRAMEF22A3QJZ6 481 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 PTCD1O75127 700 aaKnown RBP7.31□□□□□ -1.24
HMGB1-207ENST00000468384 ZMYND10O75800 440 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 CD2BP2O95400 341 aaKnown RBP7.31□□□□□ -1.24
HMGB1-207ENST00000468384 TCF15Q12870 199 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 KIF22Q14807 665 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 KANK3Q6NY19 840 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 ASCL5Q7RTU5 278 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 ZBTB38Q8NAP3 1195 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-207ENST00000468384 RAET1EQ8TD07 263 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 ZKSCAN4Q969J2 545 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-207ENST00000468384 MFSD14AQ96MC6 490 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 EPAS1Q99814 870 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 ZNF576Q9H609 170 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 GOLGA2P5Q9HBQ8 144 aa7.31□□□□□ -1.24
HMGB1-207ENST00000468384 DAXXQ9UER7 740 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-207ENST00000468384 CHD9Q3L8U1 2897 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 ABCA12Q86UK0 2595 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 ERC2O15083 957 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 ADGRE1Q14246 886 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 HFE2Q6ZVN8 426 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 DPF2Q92785 391 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 RMDN1Q96DB5 314 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 PTPN18Q99952 460 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 CEP250Q9BV73 2442 aa7.3□□□□□ -1.24
HMGB1-207ENST00000468384 MYO9BQ13459 2157 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 KLRG2A4D1S0 409 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-207ENST00000468384 ZBTB48P10074 688 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-207ENST00000468384 ALDH1B1P30837 517 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 HOXC9P31274 260 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 LACTBP83111 547 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-207ENST00000468384 ZNF385CQ66K41 422 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-207ENST00000468384 NUDT18Q6ZVK8 323 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 LARP6Q9BRS8 491 aaKnown RBP7.29□□□□□ -1.24
HMGB1-207ENST00000468384 PRDM12Q9H4Q4 367 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 C11orf49Q9H6J7 331 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 SRRDQ9UH36 339 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 DOPEY1Q5JWR5 2465 aa7.29□□□□□ -1.24
HMGB1-207ENST00000468384 RIC1Q4ADV7 1423 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 NBPF26B4DH59 902 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 IGFBP4P22692 258 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 MFSD10Q14728 455 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 GRIPAP1Q4V328 841 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 LDLRAD1Q5T700 205 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 ANGEL2Q5VTE6 544 aaKnown RBP7.28□□□□□ -1.24
HMGB1-207ENST00000468384 PRAMEF18Q5VWM3 479 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 PRRX2Q99811 253 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 VPS33BQ9H267 617 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 SCN7AQ01118 1682 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 COL4A6Q14031 1691 aa7.28□□□□□ -1.24
HMGB1-207ENST00000468384 EP300Q09472 2414 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms