RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 NBPF11Q86T75 865 aa19.13■□□□□ 0.65
SKA3-204ENST00000462482 FAM43AQ8N2R8 423 aa19.13■□□□□ 0.65
SKA3-204ENST00000462482 ZGPATQ8N5A5 531 aaKnown RBP19.13■□□□□ 0.65
SKA3-204ENST00000462482 TMEM106CQ9BVX2 250 aa19.13■□□□□ 0.65
SKA3-204ENST00000462482 RPAP1Q9BWH6 1393 aaPredicted RBP19.13■□□□□ 0.65
SKA3-204ENST00000462482 PPATQ06203 517 aa19.12■□□□□ 0.65
SKA3-204ENST00000462482 MIGA2Q7L4E1 593 aa19.12■□□□□ 0.65
SKA3-204ENST00000462482 DAGLAQ9Y4D2 1042 aa19.12■□□□□ 0.65
SKA3-204ENST00000462482 LRRFIP2Q9Y608 721 aaKnown RBP19.12■□□□□ 0.65
SKA3-204ENST00000462482 IRF6O14896 467 aa19.11■□□□□ 0.65
SKA3-204ENST00000462482 TCP10Q12799 353 aa19.11■□□□□ 0.65
SKA3-204ENST00000462482 DIXDC1Q155Q3 683 aa19.11■□□□□ 0.65
SKA3-204ENST00000462482 CDC42EP5Q6NZY7 148 aa19.11■□□□□ 0.65
SKA3-204ENST00000462482 TRMT2AQ8IZ69 625 aaKnown RBP19.11■□□□□ 0.65
SKA3-204ENST00000462482 ARMC5Q96C12 935 aa19.11■□□□□ 0.65
SKA3-204ENST00000462482 USP40Q9NVE5 1235 aa19.11■□□□□ 0.65
SKA3-204ENST00000462482 TLR2O60603 784 aa19.1■□□□□ 0.65
SKA3-204ENST00000462482 GNAI3P08754 354 aa19.1■□□□□ 0.65
SKA3-204ENST00000462482 PRDX5P30044 214 aa19.1■□□□□ 0.65
SKA3-204ENST00000462482 SLC9C1Q4G0N8 1177 aa19.1■□□□□ 0.65
SKA3-204ENST00000462482 SLF2Q8IX21 1173 aa19.1■□□□□ 0.65
SKA3-204ENST00000462482 ARAP2Q8WZ64 1704 aa19.1■□□□□ 0.65
SKA3-204ENST00000462482 SALL1Q9NSC2 1324 aa19.09■□□□□ 0.65
SKA3-204ENST00000462482 BTBD19C9JJ37 291 aa19.09■□□□□ 0.65
SKA3-204ENST00000462482 COPRSQ9NQ92 184 aa19.09■□□□□ 0.65
SKA3-204ENST00000462482 AKAP2Q9Y2D5 859 aa19.09■□□□□ 0.65
SKA3-204ENST00000462482 POTEFA5A3E0 1075 aa19.08■□□□□ 0.64
SKA3-204ENST00000462482 GNRH1P01148 92 aa19.08■□□□□ 0.64
SKA3-204ENST00000462482 INPP5BP32019 993 aa19.08■□□□□ 0.64
SKA3-204ENST00000462482 PHKA1P46020 1223 aa19.08■□□□□ 0.64
SKA3-204ENST00000462482 SPTY2D1Q68D10 685 aaPredicted RBP19.08■□□□□ 0.64
SKA3-204ENST00000462482 DZIP1Q86YF9 867 aaKnown RBP19.08■□□□□ 0.64
SKA3-204ENST00000462482 GCC1Q96CN9 775 aa19.08■□□□□ 0.64
SKA3-204ENST00000462482 PA2G4Q9UQ80 394 aaKnown RBP19.08■□□□□ 0.64
SKA3-204ENST00000462482 IPO8O15397 1037 aaKnown RBP19.07■□□□□ 0.64
SKA3-204ENST00000462482 SLC4A8Q2Y0W8 1093 aa19.07■□□□□ 0.64
SKA3-204ENST00000462482 CCDC102BQ68D86 513 aa19.07■□□□□ 0.64
SKA3-204ENST00000462482 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.07■□□□□ 0.64
SKA3-204ENST00000462482 ARHGAP45Q92619 1136 aa19.07■□□□□ 0.64
SKA3-204ENST00000462482 MEIS3Q99687 375 aa19.07■□□□□ 0.64
SKA3-204ENST00000462482 PTCH2Q9Y6C5 1203 aa19.07■□□□□ 0.64
SKA3-204ENST00000462482 SRGAP3O43295 1099 aa19.06■□□□□ 0.64
SKA3-204ENST00000462482 RARSP54136 660 aaKnown RBP19.06■□□□□ 0.64
SKA3-204ENST00000462482 PRMT2P55345 433 aa19.06■□□□□ 0.64
SKA3-204ENST00000462482 LACTBP83111 547 aaPredicted RBP19.06■□□□□ 0.64
SKA3-204ENST00000462482 NFIAQ12857 509 aa19.06■□□□□ 0.64
SKA3-204ENST00000462482 MVPQ14764 893 aaKnown RBP19.06■□□□□ 0.64
SKA3-204ENST00000462482 ANKRD23Q86SG2 305 aa19.06■□□□□ 0.64
SKA3-204ENST00000462482 ZSCAN29Q8IWY8 852 aaPredicted RBP19.06■□□□□ 0.64
SKA3-204ENST00000462482 ABCF2Q9UG63 623 aa19.06■□□□□ 0.64
SKA3-204ENST00000462482 ZNF112Q9UJU3 913 aa19.06■□□□□ 0.64
SKA3-204ENST00000462482 CCER2I3L3R5 266 aa19.05■□□□□ 0.64
SKA3-204ENST00000462482 NOL9Q5SY16 702 aaKnown RBP19.05■□□□□ 0.64
SKA3-204ENST00000462482 GORABQ5T7V8 394 aa19.05■□□□□ 0.64
SKA3-204ENST00000462482 ZNF333Q96JL9 665 aa19.05■□□□□ 0.64
SKA3-204ENST00000462482 PICK1Q9NRD5 415 aa19.05■□□□□ 0.64
SKA3-204ENST00000462482 FAM198AQ9UFP1 575 aa19.05■□□□□ 0.64
SKA3-204ENST00000462482 PDHXO00330 501 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 ZBTB22O15209 634 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 ENTPD3O75355 529 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 HOXD10P28358 340 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 ADORA1P30542 326 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 TIMM10P62072 90 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 PCDH10Q9P2E7 1040 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 KCNH4Q9UQ05 1017 aa19.04■□□□□ 0.64
SKA3-204ENST00000462482 PDE4DIPQ5VU43 2346 aa19.03■□□□□ 0.64
SKA3-204ENST00000462482 PDS5AQ29RF7 1337 aaKnown RBP19.03■□□□□ 0.64
SKA3-204ENST00000462482 A0A1B0GUL7 405 aa19.03■□□□□ 0.64
SKA3-204ENST00000462482 CXCL11O14625 94 aa19.03■□□□□ 0.64
SKA3-204ENST00000462482 EN2P19622 333 aaPredicted RBP19.03■□□□□ 0.64
SKA3-204ENST00000462482 RGS3P49796 1198 aa19.03■□□□□ 0.64
SKA3-204ENST00000462482 NEUROD6Q96NK8 337 aa19.03■□□□□ 0.64
SKA3-204ENST00000462482 PARK7Q99497 189 aaKnown RBP19.03■□□□□ 0.64
SKA3-204ENST00000462482 IDI2Q9BXS1 227 aa19.03■□□□□ 0.64
SKA3-204ENST00000462482 CAP1Q01518 475 aa19.02■□□□□ 0.64
SKA3-204ENST00000462482 TFCP2Q12800 502 aa19.02■□□□□ 0.64
SKA3-204ENST00000462482 RASGRF1Q13972 1273 aa19.02■□□□□ 0.64
SKA3-204ENST00000462482 ERICH6Q7L0X2 663 aa19.02■□□□□ 0.64
SKA3-204ENST00000462482 CPA4Q9UI42 421 aa19.02■□□□□ 0.64
SKA3-204ENST00000462482 OTOFQ9HC10 1997 aa19.02■□□□□ 0.64
SKA3-204ENST00000462482 GAKO14976 1311 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 FMNL1O95466 1100 aaPredicted RBP19.01■□□□□ 0.63
SKA3-204ENST00000462482 GNAI2P04899 355 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 PSMC4P43686 418 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 C17orf99Q6UX52 265 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 FASTKD5Q7L8L6 764 aaKnown RBP19.01■□□□□ 0.63
SKA3-204ENST00000462482 SCYL3Q8IZE3 742 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 FRAT1Q92837 279 aaPredicted RBP19.01■□□□□ 0.63
SKA3-204ENST00000462482 XAGE2Q96GT9 111 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 ARHGAP39Q9C0H5 1083 aa19.01■□□□□ 0.63
SKA3-204ENST00000462482 ECM2O94769 699 aaPredicted RBP19■□□□□ 0.63
SKA3-204ENST00000462482 MYCP01106 439 aaPredicted RBP19■□□□□ 0.63
SKA3-204ENST00000462482 LDHCP07864 332 aa19■□□□□ 0.63
SKA3-204ENST00000462482 BTDP43251 543 aa19■□□□□ 0.63
SKA3-204ENST00000462482 GSTO1P78417 241 aa19■□□□□ 0.63
SKA3-204ENST00000462482 G3BP1Q13283 466 aaKnown RBP eCLIP19■□□□□ 0.63
SKA3-204ENST00000462482 PICALMQ13492 652 aa19■□□□□ 0.63
SKA3-204ENST00000462482 MTX1Q13505 466 aa19■□□□□ 0.63
SKA3-204ENST00000462482 ZFPM1Q8IX07 1006 aa19■□□□□ 0.63
SKA3-204ENST00000462482 SH3TC2Q8TF17 1288 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms