RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 FAM43AQ8N2R8 423 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 NKX2-3Q8TAU0 364 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 PUS3Q9BZE2 481 aaKnown RBP15.46■□□□□ 0.07
HDAC4-207ENST00000461113 VEZTQ9HBM0 779 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 MYH3P11055 1940 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 TAF5LO75529 589 aa15.45■□□□□ 0.06
HDAC4-207ENST00000461113 SURF6O75683 361 aaKnown RBP15.45■□□□□ 0.06
HDAC4-207ENST00000461113 ECM2O94769 699 aaPredicted RBP15.45■□□□□ 0.06
HDAC4-207ENST00000461113 IFIT1P09914 478 aaKnown RBP15.45■□□□□ 0.06
HDAC4-207ENST00000461113 LACTBP83111 547 aaPredicted RBP15.45■□□□□ 0.06
HDAC4-207ENST00000461113 CEP85Q6P2H3 762 aa15.45■□□□□ 0.06
HDAC4-207ENST00000461113 CNKSR2Q8WXI2 1034 aa15.45■□□□□ 0.06
HDAC4-207ENST00000461113 CRBNQ96SW2 442 aa15.45■□□□□ 0.06
HDAC4-207ENST00000461113 PA2G4Q9UQ80 394 aaKnown RBP15.45■□□□□ 0.06
HDAC4-207ENST00000461113 AKAP2Q9Y2D5 859 aa15.45■□□□□ 0.06
HDAC4-207ENST00000461113 PNMA6EA0A0J9YXQ4 647 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 PDE8BO95263 885 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 KLRK1P26718 216 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 GJA8P48165 433 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 GTF2A2P52657 109 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 POLA2Q14181 598 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 PUM3Q15397 648 aaKnown RBP15.44■□□□□ 0.06
HDAC4-207ENST00000461113 VPS37DQ86XT2 251 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 MTMR14Q8NCE2 650 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 SSH3Q8TE77 659 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 COL25A1Q9BXS0 654 aaPredicted RBP15.44■□□□□ 0.06
HDAC4-207ENST00000461113 STAP2Q9UGK3 403 aa15.44■□□□□ 0.06
HDAC4-207ENST00000461113 MYO1BO43795 1136 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 SLC5A1P13866 664 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 PRMT2P55345 433 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 RASA3Q14644 834 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 CFAP100Q494V2 611 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 CAVIN4Q5BKX8 364 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 ZNF804AQ7Z570 1209 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 ERC1Q8IUD2 1116 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 AOX1Q06278 1338 aa15.43■□□□□ 0.06
HDAC4-207ENST00000461113 SPDYE2BA6NHP3 402 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 F8W031 263 aaPredicted RBP15.42■□□□□ 0.06
HDAC4-207ENST00000461113 TLR2O60603 784 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 WDHD1O75717 1129 aaPredicted RBP15.42■□□□□ 0.06
HDAC4-207ENST00000461113 GNRH1P01148 92 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 GJB1P08034 283 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 SPDYE6P0CI01 402 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 CCL5P13501 91 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 CERS5Q8N5B7 392 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 DEFB123Q8N688 67 aa15.42■□□□□ 0.06
HDAC4-207ENST00000461113 PRMT6Q96LA8 375 aaPredicted RBP15.42■□□□□ 0.06
HDAC4-207ENST00000461113 LAMA3Q16787 3333 aa15.41■□□□□ 0.06
HDAC4-207ENST00000461113 ATP2B3Q16720 1220 aa15.41■□□□□ 0.06
HDAC4-207ENST00000461113 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.41■□□□□ 0.06
HDAC4-207ENST00000461113 Q7L0L9 218 aa15.41■□□□□ 0.06
HDAC4-207ENST00000461113 ATG9AQ7Z3C6 839 aa15.41■□□□□ 0.06
HDAC4-207ENST00000461113 LPIN2Q92539 896 aa15.41■□□□□ 0.06
HDAC4-207ENST00000461113 RNF208Q9H0X6 261 aa15.41■□□□□ 0.06
HDAC4-207ENST00000461113 EVI5O60447 810 aa15.4■□□□□ 0.06
HDAC4-207ENST00000461113 FRAT2O75474 233 aaPredicted RBP15.4■□□□□ 0.06
HDAC4-207ENST00000461113 FARP2O94887 1054 aaPredicted RBP15.4■□□□□ 0.06
HDAC4-207ENST00000461113 HIBADHP31937 336 aaKnown RBP15.4■□□□□ 0.06
HDAC4-207ENST00000461113 GRK4P32298 578 aa15.4■□□□□ 0.06
HDAC4-207ENST00000461113 VGLL4Q14135 290 aa15.4■□□□□ 0.06
HDAC4-207ENST00000461113 C15orf52Q6ZUT6 534 aaKnown RBP15.4■□□□□ 0.06
HDAC4-207ENST00000461113 RAET1EQ8TD07 263 aa15.4■□□□□ 0.06
HDAC4-207ENST00000461113 GNL3LQ9NVN8 582 aaKnown RBP15.4■□□□□ 0.06
HDAC4-207ENST00000461113 SRRDQ9UH36 339 aa15.4■□□□□ 0.06
HDAC4-207ENST00000461113 STXBP5LQ9Y2K9 1186 aa15.4■□□□□ 0.06
HDAC4-207ENST00000461113 NOP58Q9Y2X3 529 aaKnown RBP15.4■□□□□ 0.06
HDAC4-207ENST00000461113 LAMB1P07942 1786 aa15.39■□□□□ 0.05
HDAC4-207ENST00000461113 ZNF646O15015 1829 aaPredicted RBP15.39■□□□□ 0.05
HDAC4-207ENST00000461113 RAB11FIP3O75154 756 aa15.39■□□□□ 0.05
HDAC4-207ENST00000461113 NEFLP07196 543 aa15.39■□□□□ 0.05
HDAC4-207ENST00000461113 CTGFP29279 349 aa15.39■□□□□ 0.05
HDAC4-207ENST00000461113 GORABQ5T7V8 394 aa15.39■□□□□ 0.05
HDAC4-207ENST00000461113 CD209Q9NNX6 404 aa15.39■□□□□ 0.05
HDAC4-207ENST00000461113 BIN2Q9UBW5 565 aaPredicted RBP15.39■□□□□ 0.05
HDAC4-207ENST00000461113 ZBTB47Q9UFB7 747 aaPredicted RBP15.39■□□□□ 0.05
HDAC4-207ENST00000461113 BTBD19C9JJ37 291 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 PSMC4P43686 418 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 RBM5P52756 815 aaKnown RBP eCLIP15.38■□□□□ 0.05
HDAC4-207ENST00000461113 MAP3K9P80192 1104 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 TFCP2Q12800 502 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 GPR153Q6NV75 609 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 CDAN1Q8IWY9 1227 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 VGLL2Q8N8G2 317 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 U2AF1L4Q8WU68 220 aaKnown RBP15.38■□□□□ 0.05
HDAC4-207ENST00000461113 TRIM47Q96LD4 638 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 NEUROD6Q96NK8 337 aa15.38■□□□□ 0.05
HDAC4-207ENST00000461113 SNAP23O00161 211 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 CETPP11597 493 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 OSBPP22059 807 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 HOXD10P28358 340 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 KIF1BPQ96EK5 621 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 CPA4Q9UI42 421 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 EXOC6BQ9Y2D4 811 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 CSADQ9Y600 493 aa15.37■□□□□ 0.05
HDAC4-207ENST00000461113 FMNL1O95466 1100 aaPredicted RBP15.36■□□□□ 0.05
HDAC4-207ENST00000461113 UBXN2AP68543 259 aa15.36■□□□□ 0.05
HDAC4-207ENST00000461113 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.36■□□□□ 0.05
HDAC4-207ENST00000461113 EXOC6Q8TAG9 804 aa15.36■□□□□ 0.05
HDAC4-207ENST00000461113 TEPSINQ96N21 525 aa15.36■□□□□ 0.05
HDAC4-207ENST00000461113 ZCCHC17Q9NP64 241 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms