RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 REM2Q8IYK8 340 aaPredicted RBP24.4■■□□□ 1.5
COL9A3-202ENST00000452372 DEFB129Q9H1M3 183 aa24.4■■□□□ 1.5
COL9A3-202ENST00000452372 HDAC1Q13547 482 aaPredicted RBP24.39■■□□□ 1.49
COL9A3-202ENST00000452372 SNRKQ9NRH2 765 aa24.39■■□□□ 1.49
COL9A3-202ENST00000452372 FZD1Q9UP38 647 aa24.39■■□□□ 1.49
COL9A3-202ENST00000452372 CLRN2A0PK11 232 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 NF2P35240 595 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 DGKZQ13574 1117 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 PRKG1Q13976 671 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 TTLL12Q14166 644 aaPredicted RBP24.38■■□□□ 1.49
COL9A3-202ENST00000452372 DIXDC1Q155Q3 683 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 SPDYE2Q495Y8 402 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 APOBEC3HQ6NTF7 200 aaKnown RBP24.38■■□□□ 1.49
COL9A3-202ENST00000452372 TBC1D9Q6ZT07 1266 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 ERICH6Q7L0X2 663 aa24.38■■□□□ 1.49
COL9A3-202ENST00000452372 TDRD3Q9H7E2 651 aaKnown RBP24.38■■□□□ 1.49
COL9A3-202ENST00000452372 CCDC85CA6NKD9 419 aa24.37■■□□□ 1.49
COL9A3-202ENST00000452372 SMARCA5O60264 1052 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-202ENST00000452372 TM4SF4P48230 202 aa24.37■■□□□ 1.49
COL9A3-202ENST00000452372 BCL11AQ9H165 835 aa24.37■■□□□ 1.49
COL9A3-202ENST00000452372 ZNF70Q9UC06 446 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-202ENST00000452372 CYP2E1P05181 493 aaPredicted RBP24.36■■□□□ 1.49
COL9A3-202ENST00000452372 VEZTQ9HBM0 779 aa24.36■■□□□ 1.49
COL9A3-202ENST00000452372 MYH2Q9UKX2 1941 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 SSC5DA1L4H1 1573 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 ZAP70P43403 619 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 MAP3K11Q16584 847 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 ARMC9Q7Z3E5 817 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 DZIP1Q86YF9 867 aaKnown RBP24.35■■□□□ 1.49
COL9A3-202ENST00000452372 SLF2Q8IX21 1173 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 FAM163AQ96GL9 167 aaPredicted RBP24.35■■□□□ 1.49
COL9A3-202ENST00000452372 ANGEL1Q9UNK9 670 aaKnown RBP24.35■■□□□ 1.49
COL9A3-202ENST00000452372 DAGLAQ9Y4D2 1042 aa24.35■■□□□ 1.49
COL9A3-202ENST00000452372 RGS19P49795 217 aa24.34■■□□□ 1.49
COL9A3-202ENST00000452372 IRX6P78412 446 aaPredicted RBP24.34■■□□□ 1.49
COL9A3-202ENST00000452372 MECOMQ03112 1051 aa24.34■■□□□ 1.49
COL9A3-202ENST00000452372 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.34■■□□□ 1.49
COL9A3-202ENST00000452372 NSUN4Q96CB9 384 aaKnown RBP24.34■■□□□ 1.49
COL9A3-202ENST00000452372 LRP2BPQ9P2M1 347 aa24.34■■□□□ 1.49
COL9A3-202ENST00000452372 IGSF3O75054 1194 aa24.33■■□□□ 1.49
COL9A3-202ENST00000452372 MKRN3Q13064 507 aaKnown RBP24.33■■□□□ 1.49
COL9A3-202ENST00000452372 TNFAIP1Q13829 316 aa24.33■■□□□ 1.49
COL9A3-202ENST00000452372 ZNF384Q8TF68 577 aa24.33■■□□□ 1.49
COL9A3-202ENST00000452372 GCC1Q96CN9 775 aa24.33■■□□□ 1.49
COL9A3-202ENST00000452372 RWDD1Q9H446 243 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-202ENST00000452372 RAI14Q9P0K7 980 aa24.33■■□□□ 1.49
COL9A3-202ENST00000452372 PPP2R3BQ9Y5P8 575 aa24.33■■□□□ 1.49
COL9A3-202ENST00000452372 GAKO14976 1311 aa24.33■■□□□ 1.48
COL9A3-202ENST00000452372 NBPF12Q5TAG4 269 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-202ENST00000452372 FKBP1CQ5VVH2 108 aa24.32■■□□□ 1.48
COL9A3-202ENST00000452372 SPRYD7Q5W111 196 aa24.32■■□□□ 1.48
COL9A3-202ENST00000452372 TBC1D8O95759 1140 aa24.31■■□□□ 1.48
COL9A3-202ENST00000452372 LDHCP07864 332 aa24.31■■□□□ 1.48
COL9A3-202ENST00000452372 GSTO1P78417 241 aa24.31■■□□□ 1.48
COL9A3-202ENST00000452372 RASA3Q14644 834 aa24.31■■□□□ 1.48
COL9A3-202ENST00000452372 PIH1D3Q9NQM4 214 aaKnown RBP24.31■■□□□ 1.48
COL9A3-202ENST00000452372 MYO5AQ9Y4I1 1855 aaKnown RBP24.3■■□□□ 1.48
COL9A3-202ENST00000452372 USP2O75604 605 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-202ENST00000452372 ATP5JP18859 108 aa24.3■■□□□ 1.48
COL9A3-202ENST00000452372 CDC42EP5Q6NZY7 148 aa24.3■■□□□ 1.48
COL9A3-202ENST00000452372 CLMNQ96JQ2 1002 aa24.3■■□□□ 1.48
COL9A3-202ENST00000452372 TMOD2Q9NZR1 351 aa24.3■■□□□ 1.48
COL9A3-202ENST00000452372 NDUFB9Q9Y6M9 179 aa24.3■■□□□ 1.48
COL9A3-202ENST00000452372 MROH7-TTC4A0A0A0MT08 1334 aa24.3■■□□□ 1.48
COL9A3-202ENST00000452372 TCP10L2B9ZVM9 353 aa24.29■■□□□ 1.48
COL9A3-202ENST00000452372 TNNI2P48788 182 aa24.29■■□□□ 1.48
COL9A3-202ENST00000452372 R3HDMLQ9H3Y0 253 aa24.29■■□□□ 1.48
COL9A3-202ENST00000452372 GPR75-ASB3A0A0A6YYF3 556 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 CACNB3P54284 484 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 SUPT20HL1Q3ZLR7 823 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 FAM83AQ86UY5 434 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 SLC10A4Q96EP9 437 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 ANTXR1Q9H6X2 564 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 USP40Q9NVE5 1235 aa24.28■■□□□ 1.48
COL9A3-202ENST00000452372 IGHDP01880 384 aa24.27■■□□□ 1.48
COL9A3-202ENST00000452372 TTF1Q15361 905 aaPredicted RBP24.27■■□□□ 1.48
COL9A3-202ENST00000452372 ANKRD45Q5TZF3 282 aa24.27■■□□□ 1.48
COL9A3-202ENST00000452372 CDAN1Q8IWY9 1227 aa24.27■■□□□ 1.48
COL9A3-202ENST00000452372 TEPSINQ96N21 525 aa24.27■■□□□ 1.48
COL9A3-202ENST00000452372 BOLA2Q9H3K6 86 aa24.27■■□□□ 1.48
COL9A3-202ENST00000452372 ECHDC1Q9NTX5 307 aa24.27■■□□□ 1.48
COL9A3-202ENST00000452372 PPP1R12BO60237 982 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-202ENST00000452372 BTDP43251 543 aa24.26■■□□□ 1.47
COL9A3-202ENST00000452372 NAA16Q6N069 864 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-202ENST00000452372 CTU1Q7Z7A3 348 aaKnown RBP24.26■■□□□ 1.47
COL9A3-202ENST00000452372 SMC5Q8IY18 1101 aa24.26■■□□□ 1.47
COL9A3-202ENST00000452372 ZNF296Q8WUU4 475 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-202ENST00000452372 CFHR5Q9BXR6 569 aa24.26■■□□□ 1.47
COL9A3-202ENST00000452372 ZBTB47Q9UFB7 747 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-202ENST00000452372 UNCXA6NJT0 531 aa24.25■■□□□ 1.47
COL9A3-202ENST00000452372 IDH1O75874 414 aaKnown RBP24.25■■□□□ 1.47
COL9A3-202ENST00000452372 GPATCH3Q96I76 525 aa24.25■■□□□ 1.47
COL9A3-202ENST00000452372 DNAJC2Q99543 621 aaKnown RBP24.25■■□□□ 1.47
COL9A3-202ENST00000452372 HAUS7Q99871 368 aa24.25■■□□□ 1.47
COL9A3-202ENST00000452372 TMEM39BQ9GZU3 492 aa24.25■■□□□ 1.47
COL9A3-202ENST00000452372 MAST2Q6P0Q8 1798 aa24.24■■□□□ 1.47
COL9A3-202ENST00000452372 DOCK2Q92608 1830 aa24.24■■□□□ 1.47
COL9A3-202ENST00000452372 MAP4K4O95819 1239 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-202ENST00000452372 GJA5P36382 358 aa24.24■■□□□ 1.47
COL9A3-202ENST00000452372 SREBF2Q12772 1141 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms