RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MIGA2Q7L4E1 593 aa16.56■□□□□ 0.24
HMGB3-204ENST00000448905 SNCAIPQ9Y6H5 919 aa16.56■□□□□ 0.24
HMGB3-204ENST00000448905 BTBD19C9JJ37 291 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 SEMA3EO15041 775 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 CIAO1O76071 339 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 CT47B1P0C2W7 299 aaPredicted RBP16.55■□□□□ 0.24
HMGB3-204ENST00000448905 EN2P19622 333 aaPredicted RBP16.55■□□□□ 0.24
HMGB3-204ENST00000448905 HOXD10P28358 340 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 ATP2B3Q16720 1220 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 USP40Q9NVE5 1235 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 DENND2AQ9ULE3 1009 aa16.55■□□□□ 0.24
HMGB3-204ENST00000448905 IL15P40933 162 aaPredicted RBP16.54■□□□□ 0.24
HMGB3-204ENST00000448905 RFX5P48382 616 aaPredicted RBP16.54■□□□□ 0.24
HMGB3-204ENST00000448905 CAP1Q01518 475 aa16.54■□□□□ 0.24
HMGB3-204ENST00000448905 TCP10Q12799 353 aa16.54■□□□□ 0.24
HMGB3-204ENST00000448905 SLF2Q8IX21 1173 aa16.54■□□□□ 0.24
HMGB3-204ENST00000448905 ZGPATQ8N5A5 531 aaKnown RBP16.54■□□□□ 0.24
HMGB3-204ENST00000448905 ZNF333Q96JL9 665 aa16.54■□□□□ 0.24
HMGB3-204ENST00000448905 API5Q9BZZ5 524 aaKnown RBP16.54■□□□□ 0.24
HMGB3-204ENST00000448905 A0A1B0GUL6 1792 aa16.54■□□□□ 0.24
HMGB3-204ENST00000448905 LACTBP83111 547 aaPredicted RBP16.53■□□□□ 0.24
HMGB3-204ENST00000448905 CDC42EP5Q6NZY7 148 aa16.53■□□□□ 0.24
HMGB3-204ENST00000448905 ATG9AQ7Z3C6 839 aa16.53■□□□□ 0.24
HMGB3-204ENST00000448905 ANKRD23Q86SG2 305 aa16.53■□□□□ 0.24
HMGB3-204ENST00000448905 SIL1Q9H173 461 aa16.53■□□□□ 0.24
HMGB3-204ENST00000448905 NOB1Q9ULX3 412 aaKnown RBP16.53■□□□□ 0.24
HMGB3-204ENST00000448905 PTCH2Q9Y6C5 1203 aa16.53■□□□□ 0.24
HMGB3-204ENST00000448905 ECM29Q5VYK3 1845 aa16.53■□□□□ 0.24
HMGB3-204ENST00000448905 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.52■□□□□ 0.24
HMGB3-204ENST00000448905 ZNF112Q9UJU3 913 aa16.52■□□□□ 0.24
HMGB3-204ENST00000448905 DAGLAQ9Y4D2 1042 aa16.52■□□□□ 0.24
HMGB3-204ENST00000448905 PDHXO00330 501 aa16.51■□□□□ 0.23
HMGB3-204ENST00000448905 FMNL1O95466 1100 aaPredicted RBP16.51■□□□□ 0.23
HMGB3-204ENST00000448905 INPP5BP32019 993 aa16.51■□□□□ 0.23
HMGB3-204ENST00000448905 SPTY2D1Q68D10 685 aaPredicted RBP16.51■□□□□ 0.23
HMGB3-204ENST00000448905 AKAP2Q9Y2D5 859 aa16.51■□□□□ 0.23
HMGB3-204ENST00000448905 SALL1Q9NSC2 1324 aa16.5■□□□□ 0.23
HMGB3-204ENST00000448905 CXCL11O14625 94 aa16.5■□□□□ 0.23
HMGB3-204ENST00000448905 PRDX5P30044 214 aa16.5■□□□□ 0.23
HMGB3-204ENST00000448905 DIXDC1Q155Q3 683 aa16.5■□□□□ 0.23
HMGB3-204ENST00000448905 C17orf99Q6UX52 265 aa16.5■□□□□ 0.23
HMGB3-204ENST00000448905 ZSCAN29Q8IWY8 852 aaPredicted RBP16.5■□□□□ 0.23
HMGB3-204ENST00000448905 PICK1Q9NRD5 415 aa16.5■□□□□ 0.23
HMGB3-204ENST00000448905 RPAP1Q9BWH6 1393 aaPredicted RBP16.5■□□□□ 0.23
HMGB3-204ENST00000448905 ENTPD3O75355 529 aa16.49■□□□□ 0.23
HMGB3-204ENST00000448905 PSMC4P43686 418 aa16.49■□□□□ 0.23
HMGB3-204ENST00000448905 FASTKD5Q7L8L6 764 aaKnown RBP16.49■□□□□ 0.23
HMGB3-204ENST00000448905 CDCA7LQ96GN5 454 aa16.49■□□□□ 0.23
HMGB3-204ENST00000448905 CPA4Q9UI42 421 aa16.49■□□□□ 0.23
HMGB3-204ENST00000448905 KCNH4Q9UQ05 1017 aa16.49■□□□□ 0.23
HMGB3-204ENST00000448905 ZBTB22O15209 634 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 MYCP01106 439 aaPredicted RBP16.48■□□□□ 0.23
HMGB3-204ENST00000448905 GNAI3P08754 354 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 NFIAQ12857 509 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 HABP4Q5JVS0 413 aaKnown RBP16.48■□□□□ 0.23
HMGB3-204ENST00000448905 NOL9Q5SY16 702 aaKnown RBP16.48■□□□□ 0.23
HMGB3-204ENST00000448905 CCDC102BQ68D86 513 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 DZIP1Q86YF9 867 aaKnown RBP16.48■□□□□ 0.23
HMGB3-204ENST00000448905 TRMT2AQ8IZ69 625 aaKnown RBP16.48■□□□□ 0.23
HMGB3-204ENST00000448905 NKX2-3Q8TAU0 364 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 RAET1EQ8TD07 263 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 SH3TC2Q8TF17 1288 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 IDI2Q9BXS1 227 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 COPRSQ9NQ92 184 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 ABCF2Q9UG63 623 aa16.48■□□□□ 0.23
HMGB3-204ENST00000448905 LRRFIP2Q9Y608 721 aaKnown RBP16.48■□□□□ 0.23
HMGB3-204ENST00000448905 OTOFQ9HC10 1997 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 HTTP42858 3142 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 PHKA1P46020 1223 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 TIMM10P62072 90 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 FAM163AQ96GL9 167 aaPredicted RBP16.47■□□□□ 0.23
HMGB3-204ENST00000448905 TRIM47Q96LD4 638 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 PARK7Q99497 189 aaKnown RBP16.47■□□□□ 0.23
HMGB3-204ENST00000448905 ARHGAP39Q9C0H5 1083 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 BIN2Q9UBW5 565 aaPredicted RBP16.47■□□□□ 0.23
HMGB3-204ENST00000448905 FAM198AQ9UFP1 575 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 SRRDQ9UH36 339 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 ZHX2Q9Y6X8 837 aa16.47■□□□□ 0.23
HMGB3-204ENST00000448905 CACNA1FO60840 1977 aa16.46■□□□□ 0.23
HMGB3-204ENST00000448905 IPO8O15397 1037 aaKnown RBP16.46■□□□□ 0.23
HMGB3-204ENST00000448905 ECM2O94769 699 aaPredicted RBP16.46■□□□□ 0.23
HMGB3-204ENST00000448905 MVPQ14764 893 aaKnown RBP16.46■□□□□ 0.23
HMGB3-204ENST00000448905 GORABQ5T7V8 394 aa16.46■□□□□ 0.23
HMGB3-204ENST00000448905 ARHGAP45Q92619 1136 aa16.46■□□□□ 0.23
HMGB3-204ENST00000448905 MKI67P46013 3256 aaKnown RBP16.46■□□□□ 0.22
HMGB3-204ENST00000448905 CENPFP49454 3210 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 SRGAP3O43295 1099 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 LDHCP07864 332 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 GRK4P32298 578 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 RGS3P49796 1198 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 FCGRTP55899 365 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 SCYL3Q8IZE3 742 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 PA2G4Q9UQ80 394 aaKnown RBP16.45■□□□□ 0.22
HMGB3-204ENST00000448905 LAMB1P07942 1786 aa16.45■□□□□ 0.22
HMGB3-204ENST00000448905 CTNND1O60716 968 aaKnown RBP16.44■□□□□ 0.22
HMGB3-204ENST00000448905 UBXN2AP68543 259 aa16.44■□□□□ 0.22
HMGB3-204ENST00000448905 GSTO1P78417 241 aa16.44■□□□□ 0.22
HMGB3-204ENST00000448905 ERICH6Q7L0X2 663 aa16.44■□□□□ 0.22
HMGB3-204ENST00000448905 ZFPM1Q8IX07 1006 aa16.44■□□□□ 0.22
HMGB3-204ENST00000448905 NEUROD6Q96NK8 337 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms