RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 FAM83AQ86UY5 434 aa19.98■□□□□ 0.79
SF3A1-204ENST00000447376 USP40Q9NVE5 1235 aa19.98■□□□□ 0.79
SF3A1-204ENST00000447376 ANGEL1Q9UNK9 670 aaKnown RBP19.98■□□□□ 0.79
SF3A1-204ENST00000447376 IREB2P48200 963 aaKnown RBP19.97■□□□□ 0.79
SF3A1-204ENST00000447376 TBC1D9Q6ZT07 1266 aa19.97■□□□□ 0.79
SF3A1-204ENST00000447376 EXOC6Q8TAG9 804 aa19.97■□□□□ 0.79
SF3A1-204ENST00000447376 MROH7-TTC4A0A0A0MT08 1334 aa19.97■□□□□ 0.79
SF3A1-204ENST00000447376 UBE2Q2LH0YL09 131 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 ZAP70P43403 619 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 CACNB3P54284 484 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 CDC42EP5Q6NZY7 148 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 FAM163AQ96GL9 167 aaPredicted RBP19.96■□□□□ 0.79
SF3A1-204ENST00000447376 PCDHB15Q9Y5E8 787 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 AOX1Q06278 1338 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 MYH2Q9UKX2 1941 aa19.96■□□□□ 0.79
SF3A1-204ENST00000447376 MAP4K4O95819 1239 aaPredicted RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 HSPA1AP0DMV8 641 aaKnown RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 HSPA1BP0DMV9 641 aaKnown RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 BTDP43251 543 aa19.95■□□□□ 0.78
SF3A1-204ENST00000447376 TTF1Q15361 905 aaPredicted RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 NBPF12Q5TAG4 269 aaPredicted RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 NAA16Q6N069 864 aaPredicted RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 NSUN4Q96CB9 384 aaKnown RBP19.95■□□□□ 0.78
SF3A1-204ENST00000447376 GPATCH3Q96I76 525 aa19.95■□□□□ 0.78
SF3A1-204ENST00000447376 TMEM39BQ9GZU3 492 aa19.95■□□□□ 0.78
SF3A1-204ENST00000447376 DCTPP1Q9H773 170 aa19.95■□□□□ 0.78
SF3A1-204ENST00000447376 GAKO14976 1311 aa19.95■□□□□ 0.78
SF3A1-204ENST00000447376 UNCXA6NJT0 531 aa19.94■□□□□ 0.78
SF3A1-204ENST00000447376 BAG3O95817 575 aa19.94■□□□□ 0.78
SF3A1-204ENST00000447376 CYP2E1P05181 493 aaPredicted RBP19.94■□□□□ 0.78
SF3A1-204ENST00000447376 DCAF15Q66K64 600 aa19.94■□□□□ 0.78
SF3A1-204ENST00000447376 FAM151AQ8WW52 585 aa19.94■□□□□ 0.78
SF3A1-204ENST00000447376 AOC2O75106 756 aa19.93■□□□□ 0.78
SF3A1-204ENST00000447376 IDH1O75874 414 aaKnown RBP19.93■□□□□ 0.78
SF3A1-204ENST00000447376 SLC10A3P09131 477 aa19.93■□□□□ 0.78
SF3A1-204ENST00000447376 IRX6P78412 446 aaPredicted RBP19.93■□□□□ 0.78
SF3A1-204ENST00000447376 MAP3K12Q12852 859 aa19.93■□□□□ 0.78
SF3A1-204ENST00000447376 TMED8Q6PL24 325 aaPredicted RBP19.93■□□□□ 0.78
SF3A1-204ENST00000447376 MOB2Q70IA6 237 aa19.93■□□□□ 0.78
SF3A1-204ENST00000447376 REM2Q8IYK8 340 aaPredicted RBP19.93■□□□□ 0.78
SF3A1-204ENST00000447376 RPAP1Q9BWH6 1393 aaPredicted RBP19.93■□□□□ 0.78
SF3A1-204ENST00000447376 GPR75-ASB3A0A0A6YYF3 556 aa19.92■□□□□ 0.78
SF3A1-204ENST00000447376 PLCG2P16885 1265 aa19.92■□□□□ 0.78
SF3A1-204ENST00000447376 MAP3K11Q16584 847 aa19.92■□□□□ 0.78
SF3A1-204ENST00000447376 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.92■□□□□ 0.78
SF3A1-204ENST00000447376 SLC10A4Q96EP9 437 aa19.92■□□□□ 0.78
SF3A1-204ENST00000447376 RWDD1Q9H446 243 aaPredicted RBP19.92■□□□□ 0.78
SF3A1-204ENST00000447376 MAST2Q6P0Q8 1798 aa19.92■□□□□ 0.78
SF3A1-204ENST00000447376 TCP10Q12799 353 aa19.91■□□□□ 0.78
SF3A1-204ENST00000447376 HDAC1Q13547 482 aaPredicted RBP19.91■□□□□ 0.78
SF3A1-204ENST00000447376 CERS3Q8IU89 383 aa19.91■□□□□ 0.78
SF3A1-204ENST00000447376 ZSCAN29Q8IWY8 852 aaPredicted RBP19.91■□□□□ 0.78
SF3A1-204ENST00000447376 ANKRD13AQ8IZ07 590 aa19.91■□□□□ 0.78
SF3A1-204ENST00000447376 DNAJC2Q99543 621 aaKnown RBP19.91■□□□□ 0.78
SF3A1-204ENST00000447376 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.91■□□□□ 0.78
SF3A1-204ENST00000447376 THSD7BQ9C0I4 1608 aa19.91■□□□□ 0.78
SF3A1-204ENST00000447376 AKAP11Q9UKA4 1901 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 CA12O43570 354 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 ENTPD3O75355 529 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 RASAL3Q86YV0 1011 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 TEPSINQ96N21 525 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 IDI2Q9BXS1 227 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 WBP1LQ9NX94 342 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 CSADQ9Y600 493 aa19.9■□□□□ 0.78
SF3A1-204ENST00000447376 SSC5DA1L4H1 1573 aa19.89■□□□□ 0.77
SF3A1-204ENST00000447376 SMARCA5O60264 1052 aaPredicted RBP19.89■□□□□ 0.77
SF3A1-204ENST00000447376 RGS3P49796 1198 aa19.89■□□□□ 0.77
SF3A1-204ENST00000447376 PICALMQ13492 652 aa19.89■□□□□ 0.77
SF3A1-204ENST00000447376 LDLRAD1Q5T700 205 aa19.89■□□□□ 0.77
SF3A1-204ENST00000447376 GCC1Q96CN9 775 aa19.89■□□□□ 0.77
SF3A1-204ENST00000447376 PIH1D3Q9NQM4 214 aaKnown RBP19.89■□□□□ 0.77
SF3A1-204ENST00000447376 FAM155AB1AL88 458 aaPredicted RBP19.88■□□□□ 0.77
SF3A1-204ENST00000447376 USP2O75604 605 aaPredicted RBP19.88■□□□□ 0.77
SF3A1-204ENST00000447376 NEFLP07196 543 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 ATP5JP18859 108 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 CYP7A1P22680 504 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 NFIAQ12857 509 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 TEX11Q8IYF3 940 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 ZNF341Q9BYN7 854 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 FZD1Q9UP38 647 aa19.88■□□□□ 0.77
SF3A1-204ENST00000447376 AK9Q5TCS8 1911 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 GOLIM4O00461 696 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 CTCFP49711 727 aaPredicted RBP19.87■□□□□ 0.77
SF3A1-204ENST00000447376 KIF23Q02241 960 aaPredicted RBP19.87■□□□□ 0.77
SF3A1-204ENST00000447376 SREBF2Q12772 1141 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 CSRNP1Q96S65 589 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.87■□□□□ 0.771e-6■□□□□ 10.3
SF3A1-204ENST00000447376 BOLA2Q9H3K6 86 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 ECHDC1Q9NTX5 307 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 AATFQ9NY61 560 aaKnown RBP eCLIP19.87■□□□□ 0.77
SF3A1-204ENST00000447376 FAM198AQ9UFP1 575 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 NDUFB9Q9Y6M9 179 aa19.87■□□□□ 0.77
SF3A1-204ENST00000447376 ZBTB48P10074 688 aaPredicted RBP19.86■□□□□ 0.77
SF3A1-204ENST00000447376 MAP3K9P80192 1104 aa19.86■□□□□ 0.77
SF3A1-204ENST00000447376 MAGEB6Q8N7X4 407 aa19.86■□□□□ 0.77
SF3A1-204ENST00000447376 ZNF384Q8TF68 577 aa19.86■□□□□ 0.77
SF3A1-204ENST00000447376 PAG1Q9NWQ8 432 aa19.86■□□□□ 0.77
SF3A1-204ENST00000447376 NPM3O75607 178 aaKnown RBP19.85■□□□□ 0.77
SF3A1-204ENST00000447376 ZSCAN25Q6NSZ9 544 aa19.85■□□□□ 0.77
SF3A1-204ENST00000447376 CDAN1Q8IWY9 1227 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms