RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.46□□□□□ -0.25
SF3A1-203ENST00000444440 SLC10A4Q96EP9 437 aa13.46□□□□□ -0.25
SF3A1-203ENST00000444440 NEUROD6Q96NK8 337 aa13.46□□□□□ -0.25
SF3A1-203ENST00000444440 ELP3Q9H9T3 547 aa13.46□□□□□ -0.25
SF3A1-203ENST00000444440 GNL3LQ9NVN8 582 aaKnown RBP13.46□□□□□ -0.25
SF3A1-203ENST00000444440 FAM198AQ9UFP1 575 aa13.46□□□□□ -0.25
SF3A1-203ENST00000444440 MYH1P12882 1939 aa13.46□□□□□ -0.25
SF3A1-203ENST00000444440 MYH7P12883 1935 aa13.46□□□□□ -0.25
SF3A1-203ENST00000444440 RPAP1Q9BWH6 1393 aaPredicted RBP13.45□□□□□ -0.26
SF3A1-203ENST00000444440 TNRC18O15417 2968 aaPredicted RBP13.45□□□□□ -0.26
SF3A1-203ENST00000444440 GAKO14976 1311 aa13.45□□□□□ -0.26
SF3A1-203ENST00000444440 PDS5AQ29RF7 1337 aaKnown RBP13.45□□□□□ -0.26
SF3A1-203ENST00000444440 IGF2BP3O00425 579 aaKnown RBP eCLIP13.45□□□□□ -0.26
SF3A1-203ENST00000444440 IREB2P48200 963 aaKnown RBP13.45□□□□□ -0.26
SF3A1-203ENST00000444440 DGKZQ13574 1117 aa13.45□□□□□ -0.26
SF3A1-203ENST00000444440 VGLL4Q14135 290 aa13.45□□□□□ -0.26
SF3A1-203ENST00000444440 ZFPM1Q8IX07 1006 aa13.45□□□□□ -0.26
SF3A1-203ENST00000444440 REM2Q8IYK8 340 aaPredicted RBP13.45□□□□□ -0.26
SF3A1-203ENST00000444440 HMG20BQ9P0W2 317 aa13.45□□□□□ -0.26
SF3A1-203ENST00000444440 AKAP2Q9Y2D5 859 aa13.45□□□□□ -0.26
SF3A1-203ENST00000444440 SLURP2P0DP57 97 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 ARID4AP29374 1257 aaPredicted RBP13.44□□□□□ -0.26
SF3A1-203ENST00000444440 MCAMP43121 646 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 TNNI2P48788 182 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 TCP10Q12799 353 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 G3BP1Q13283 466 aaKnown RBP eCLIP13.44□□□□□ -0.262e-6■■□□□ 14.3
SF3A1-203ENST00000444440 MVPQ14764 893 aaKnown RBP13.44□□□□□ -0.26
SF3A1-203ENST00000444440 FKBP1CQ5VVH2 108 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 CEP85Q6P2H3 762 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 TBC1D9Q6ZT07 1266 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 FAM83AQ86UY5 434 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 ANKRD13AQ8IZ07 590 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 DBNDD2Q9BQY9 259 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 TLR7Q9NYK1 1049 aaKnown RBP13.44□□□□□ -0.26
SF3A1-203ENST00000444440 ABCF2Q9UG63 623 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 MGAMO43451 1857 aa13.44□□□□□ -0.26
SF3A1-203ENST00000444440 ZBTB48P10074 688 aaPredicted RBP13.43□□□□□ -0.26
SF3A1-203ENST00000444440 TNNI3KQ59H18 835 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 MIGA2Q7L4E1 593 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 IFNL1Q8IU54 200 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 ZNF296Q8WUU4 475 aaPredicted RBP13.43□□□□□ -0.26
SF3A1-203ENST00000444440 ZKSCAN4Q969J2 545 aaPredicted RBP13.43□□□□□ -0.26
SF3A1-203ENST00000444440 OPTNQ96CV9 577 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 MS4A4AQ96JQ5 239 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 PTPN18Q99952 460 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 TMOD2Q9NZR1 351 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 SNCAIPQ9Y6H5 919 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 FPGT-TNNI3KV9GXZ4 949 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 ATRNL1Q5VV63 1379 aa13.43□□□□□ -0.26
SF3A1-203ENST00000444440 UNCXA6NJT0 531 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 SURF6O75683 361 aaKnown RBP13.42□□□□□ -0.26
SF3A1-203ENST00000444440 MECOMQ03112 1051 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 SREBF2Q12772 1141 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 SH3BP5LQ7L8J4 393 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 SPATA5Q8NB90 893 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 FAM151AQ8WW52 585 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 DDX4Q9NQI0 724 aaKnown RBP13.42□□□□□ -0.26
SF3A1-203ENST00000444440 USP40Q9NVE5 1235 aa13.42□□□□□ -0.26
SF3A1-203ENST00000444440 NOP58Q9Y2X3 529 aaKnown RBP13.42□□□□□ -0.26
SF3A1-203ENST00000444440 MROH7-TTC4A0A0A0MT08 1334 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 MANSC4A6NHS7 340 aaPredicted RBP13.41□□□□□ -0.26
SF3A1-203ENST00000444440 GPR25O00155 361 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 INPP5BP32019 993 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 MAP3K9P80192 1104 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 CAP1Q01518 475 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 C20orf194Q5TEA3 1177 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 DZIP1Q86YF9 867 aaKnown RBP13.41□□□□□ -0.26
SF3A1-203ENST00000444440 WRNIP1Q96S55 665 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 CFHR5Q9BXR6 569 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 GPR108Q9NPR9 543 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 SNRKQ9NRH2 765 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 DBNLQ9UJU6 430 aaKnown RBP13.41□□□□□ -0.26
SF3A1-203ENST00000444440 COG6Q9Y2V7 657 aa13.41□□□□□ -0.26
SF3A1-203ENST00000444440 DDX60LQ5H9U9 1706 aaKnown RBP13.41□□□□□ -0.26
SF3A1-203ENST00000444440 MKI67P46013 3256 aaKnown RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 NAV1Q8NEY1 1877 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 TESPA1A2RU30 521 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 CCDC85CA6NKD9 419 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 WDHD1O75717 1129 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 BTDP43251 543 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 RGS3P49796 1198 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 RHBDL3P58872 404 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 SIRT2Q8IXJ6 389 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 ZGPATQ8N5A5 531 aaKnown RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 BRI3BPQ8WY22 251 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 NSUN4Q96CB9 384 aaKnown RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 EAF2Q96CJ1 260 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 OTUD5Q96G74 571 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 FAM163AQ96GL9 167 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 CCDC8Q9H0W5 538 aaPredicted RBP13.4□□□□□ -0.26
SF3A1-203ENST00000444440 RCAN3Q9UKA8 241 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 EXOC6BQ9Y2D4 811 aa13.4□□□□□ -0.26
SF3A1-203ENST00000444440 DDTLA6NHG4 134 aaPredicted RBP13.39□□□□□ -0.27
SF3A1-203ENST00000444440 OS9Q13438 667 aaPredicted RBP13.39□□□□□ -0.27
SF3A1-203ENST00000444440 GORABQ5T7V8 394 aa13.39□□□□□ -0.27
SF3A1-203ENST00000444440 ERICH6Q7L0X2 663 aa13.39□□□□□ -0.27
SF3A1-203ENST00000444440 IDI2Q9BXS1 227 aa13.39□□□□□ -0.27
SF3A1-203ENST00000444440 ZNF112Q9UJU3 913 aa13.39□□□□□ -0.27
SF3A1-203ENST00000444440 NDUFB9Q9Y6M9 179 aa13.39□□□□□ -0.27
SF3A1-203ENST00000444440 LOC285556D6RIA3 1793 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms