RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 METAP2P50579 478 aaKnown RBP eCLIP9.77□□□□□ -0.85
CD44-208ENST00000428726 GRIN1Q05586 938 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 SASS6Q6UVJ0 657 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.77□□□□□ -0.85
CD44-208ENST00000428726 NBPF5PQ86XG9 351 aaPredicted RBP9.77□□□□□ -0.85
CD44-208ENST00000428726 IFNL3Q8IZI9 196 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 ALG1Q9BT22 464 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 TAF1P21675 1872 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 FOXN1O15353 648 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 PFKFB2O60825 505 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 ZNF165P49910 485 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 NDUFA8P51970 172 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 PUM3Q15397 648 aaKnown RBP9.76□□□□□ -0.85
CD44-208ENST00000428726 DIXDC1Q155Q3 683 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 GRIK5Q16478 980 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.76□□□□□ -0.85
CD44-208ENST00000428726 TRMT1Q9NXH9 659 aaKnown RBP9.76□□□□□ -0.85
CD44-208ENST00000428726 ZHX1Q9UKY1 873 aaPredicted RBP9.76□□□□□ -0.85
CD44-208ENST00000428726 SPATA31A1Q5TZJ5 1347 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 LETM1O95202 739 aaPredicted RBP9.76□□□□□ -0.85
CD44-208ENST00000428726 SLC5A1P13866 664 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 TRIM28Q13263 835 aaKnown RBP9.76□□□□□ -0.85
CD44-208ENST00000428726 ZNF827Q17R98 1081 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 CCDC186Q7Z3E2 898 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 DSCC1Q9BVC3 393 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 ANKIB1Q9P2G1 1089 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 SAP30BPQ9UHR5 308 aaKnown RBP9.76□□□□□ -0.85
CD44-208ENST00000428726 FBXO3Q9UK99 471 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 PCDHA7Q9UN72 937 aa9.76□□□□□ -0.85
CD44-208ENST00000428726 SPDYE4A6NLX3 237 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 GOLGA8AA7E2F4 631 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 BTBD18B2RXH4 712 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 CCDC192P0DO97 292 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 HS1BP3Q53T59 392 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 ZNF34Q8IZ26 560 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 KLHL34Q8N239 644 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 VGLL2Q8N8G2 317 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 EEF2KMTQ96G04 330 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 STRBPQ96SI9 672 aaKnown RBP9.75□□□□□ -0.85
CD44-208ENST00000428726 CARMIL3Q8ND23 1372 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 NHSL1Q5SYE7 1610 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 RIMBP2O15034 1052 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 CDC25AP30304 524 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 NFIXQ14938 502 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 OXER1Q8TDS5 423 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 LPIN2Q92539 896 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 BCL9O00512 1426 aa9.75□□□□□ -0.85
CD44-208ENST00000428726 TPM2P07951 284 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 CBX1P83916 185 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 MAP3K12Q12852 859 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 RIC1Q4ADV7 1423 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 SYNE3Q6ZMZ3 975 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 GPIHBP1Q8IV16 184 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 MB21D2Q8IYB1 491 aaPredicted RBP9.74□□□□□ -0.85
CD44-208ENST00000428726 SLC44A5Q8NCS7 719 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.74□□□□□ -0.85
CD44-208ENST00000428726 PDLIM2Q96JY6 352 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 CCNL1Q9UK58 526 aaPredicted RBP9.74□□□□□ -0.85
CD44-208ENST00000428726 TOGARAM1Q9Y4F4 1720 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 GSG1L2A8MUP6 293 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 ADAMTS3O15072 1205 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 HMGB1P09429 215 aaKnown RBP9.74□□□□□ -0.85
CD44-208ENST00000428726 CCDC152Q4G0S7 254 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 MSL1Q68DK7 614 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 ANKRD18AQ8IVF6 992 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 DYNLL2Q96FJ2 89 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 VPS54Q9P1Q0 977 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 CCDC69A6NI79 296 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 BECN2A8MW95 431 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 ZPR1O75312 459 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 CCDC73Q6ZRK6 1079 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 FAM196AQ6ZSG2 479 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 MFSD6Q6ZSS7 791 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 USP49Q70CQ1 688 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 AOPEPQ8N6M6 819 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 C16orf45Q96MC5 204 aaPredicted RBP9.74□□□□□ -0.85
CD44-208ENST00000428726 PLIN2Q99541 437 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 MXD3Q9BW11 206 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 USP21Q9UK80 565 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 SLC12A7Q9Y666 1083 aa9.74□□□□□ -0.85
CD44-208ENST00000428726 SPEF2Q9C093 1822 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 USP17L12C9JPN9 530 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 USP17L21D6R901 530 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 ZBTB43O43298 467 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 KINO60870 393 aaKnown RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 WDHD1O75717 1129 aaPredicted RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 NTSR2O95665 410 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 EIF6P56537 245 aaKnown RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 LRRFIP1Q32MZ4 808 aaKnown RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 APOA5Q6Q788 366 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 PLA2G12BQ9BX93 195 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 SCAND2PQ9GZW5 306 aaPredicted RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 LMOD1P29536 600 aaPredicted RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 NAA30Q147X3 362 aaPredicted RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 KRT40Q6A162 431 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 SAMD1Q6SPF0 538 aaPredicted RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 SETDB2Q96T68 719 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 PDCL3Q9H2J4 239 aa9.73□□□□□ -0.85
CD44-208ENST00000428726 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.73□□□□□ -0.85
CD44-208ENST00000428726 CTNNA3Q9UI47 895 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms