RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ACSBG1Q96GR2 724 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 PALLDQ8WX93 1383 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 EXOSC10Q01780 885 aaKnown RBP9.97□□□□□ -0.81
USP40-203ENST00000427112 FBXO18Q8NFZ0 1043 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 PLBD2Q8NHP8 589 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 NCOA7Q8NI08 942 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 SMARCC2Q8TAQ2 1214 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 KCNB2Q92953 911 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 BLZF1Q9H2G9 400 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 ZNF446Q9NWS9 450 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 HPS5Q9UPZ3 1129 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 ZNF532Q9HCE3 1301 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 REREQ9P2R6 1566 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 MBD4O95243 580 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 ITGA6P23229 1130 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 TDO2P48775 406 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 WDR24Q96S15 920 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 SERTAD1Q9UHV2 236 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 FOXP2O15409 715 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 IARSP41252 1262 aaKnown RBP9.97□□□□□ -0.81
USP40-203ENST00000427112 CLCN6P51797 869 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 MCM6Q14566 821 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 SHC4Q6S5L8 630 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 TOGARAM2Q6ZUX3 1019 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 FOXP4Q8IVH2 680 aaPredicted RBP9.97□□□□□ -0.81
USP40-203ENST00000427112 SUGCTQ9HAC7 445 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 CABP5Q9NP86 173 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 SEC31BQ9NQW1 1179 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 OGFRQ9NZT2 677 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 NWD1Q149M9 1564 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 NEDD4P46934 1319 aa9.97□□□□□ -0.81
USP40-203ENST00000427112 CTIFO43310 598 aaKnown RBP9.96□□□□□ -0.81
USP40-203ENST00000427112 IL15P40933 162 aaPredicted RBP9.96□□□□□ -0.81
USP40-203ENST00000427112 KIF23Q02241 960 aaPredicted RBP9.96□□□□□ -0.81
USP40-203ENST00000427112 USPL1Q5W0Q7 1092 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 PAXBP1Q9Y5B6 917 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 AKAP12Q02952 1782 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 RHOXF2BP0C7M4 288 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 TPM4P67936 248 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 ADALQ6DHV7 355 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 OLFM4Q6UX06 510 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 RHOXF2Q9BQY4 288 aa9.96□□□□□ -0.81
USP40-203ENST00000427112 FAM208AQ9UK61 1670 aaKnown RBP9.96□□□□□ -0.82
USP40-203ENST00000427112 SETD1AO15047 1707 aaKnown RBP9.96□□□□□ -0.82
USP40-203ENST00000427112 FANCGO15287 622 aa9.96□□□□□ -0.82
USP40-203ENST00000427112 DNA2P51530 1060 aa9.96□□□□□ -0.82
USP40-203ENST00000427112 KRT222Q8N1A0 295 aa9.96□□□□□ -0.82
USP40-203ENST00000427112 VPS54Q9P1Q0 977 aa9.96□□□□□ -0.82
USP40-203ENST00000427112 ZBTB43O43298 467 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 ABL1P00519 1130 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 FMR1Q06787 632 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP40-203ENST00000427112 NAA16Q6N069 864 aaPredicted RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 ZNF397Q8NF99 534 aaPredicted RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 RASSF8Q8NHQ8 419 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 NAPBQ9H115 298 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 BABAM1Q9NWV8 329 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 NFE2L3Q9Y4A8 694 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 PCDHB6Q9Y5E3 794 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 KDM6AO15550 1401 aaPredicted RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 TEX33O43247 280 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 EVCP57679 992 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 ZNF174Q15697 407 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 ZCRB1Q8TBF4 217 aaKnown RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 CCDC12Q8WUD4 166 aaPredicted RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 EPSTI1Q96J88 318 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 DDX41Q9UJV9 622 aaKnown RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 SLC12A7Q9Y666 1083 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 SOWAHDA6NJG2 315 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 RANBP6O60518 1105 aaKnown RBP9.95□□□□□ -0.82
USP40-203ENST00000427112 BCAMP50895 628 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 FAM193AP78312 1265 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 ST5P78524 1137 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 MRFAP1L1Q96HT8 127 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 DCAF5Q96JK2 942 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 POLD4Q9HCU8 107 aa9.95□□□□□ -0.82
USP40-203ENST00000427112 NRDCO43847 1150 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 ZMYND10O75800 440 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 KCNH3Q9ULD8 1083 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 HMGB1P09429 215 aaKnown RBP9.94□□□□□ -0.82
USP40-203ENST00000427112 SLC51AQ86UW1 340 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 DIS3L2Q8IYB7 885 aaKnown RBP9.94□□□□□ -0.82
USP40-203ENST00000427112 NOL10Q9BSC4 688 aaKnown RBP9.94□□□□□ -0.82
USP40-203ENST00000427112 HELLSQ9NRZ9 838 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 ZSWIM5Q9P217 1185 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 LRP2BPQ9P2M1 347 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 CTAGE5O15320 804 aa9.94□□□□□ -0.82
USP40-203ENST00000427112 METTL16Q86W50 562 aaKnown RBP9.94□□□□□ -0.82
USP40-203ENST00000427112 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP40-203ENST00000427112 NMT2O60551 498 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 BMP6P22004 513 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 NLRP12P59046 1061 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 AXDND1Q5T1B0 1012 aaPredicted RBP9.93□□□□□ -0.82
USP40-203ENST00000427112 DSCC1Q9BVC3 393 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 NBPF3Q9H094 633 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 VPS16Q9H269 839 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 RTEL1Q9NZ71 1219 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 MEGF6O75095 1541 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 H7C1W4 665 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 SLFN14P0C7P3 912 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 CASP7P55210 303 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms