RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 TRIM56Q9BRZ2 755 aaKnown RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 FLIIQ13045 1269 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 RBBP5Q15291 538 aaKnown RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 FNBP1Q96RU3 617 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 SH2D4AQ9H788 454 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 SLC52A1Q9NWF4 448 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 NUTM2AQ8IVF1 878 aaPredicted RBP8.77□□□□□ -1
SYNE1-210ENST00000409694 NRBF2Q96F24 287 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 CADPSQ9ULU8 1353 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 TLDC2A0PJX2 215 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 TRIM75PA6NK02 468 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 MAP2K2P36507 400 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 PAK2Q13177 524 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 NONOQ15233 471 aaKnown RBP eCLIP8.77□□□□□ -1
SYNE1-210ENST00000409694 TRIML1Q8N9V2 468 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 RPGRIP1Q96KN7 1286 aa8.77□□□□□ -1
SYNE1-210ENST00000409694 NCAPD3P42695 1498 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 RALGAPBQ86X10 1494 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 SYF2O95926 243 aaKnown RBP8.77□□□□□ -1.01
SYNE1-210ENST00000409694 GABPB1Q06547 395 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-210ENST00000409694 BRDTQ58F21 947 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-210ENST00000409694 CDCA7LQ96GN5 454 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 ZNF277Q9NRM2 450 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-210ENST00000409694 OPHN1O60890 802 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 PYGLP06737 847 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 P4HA1P13674 534 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 CCDC93Q567U6 631 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 ERO1AQ96HE7 468 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 VAT1LQ9HCJ6 419 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 AP1ARQ63HQ0 302 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 CXorf38Q8TB03 319 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 RNF40O75150 1001 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 RHOXF2BP0C7M4 288 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 RASEFQ8IZ41 740 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 GRK7Q8WTQ7 553 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 RHOXF2Q9BQY4 288 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 NUCKS1Q9H1E3 243 aaKnown RBP8.77□□□□□ -1.01
SYNE1-210ENST00000409694 ELP1O95163 1332 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 FCHSD1Q86WN1 690 aa8.77□□□□□ -1.01
SYNE1-210ENST00000409694 BAG1Q99933 345 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-210ENST00000409694 HCLS1P14317 486 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-210ENST00000409694 HAUS3Q68CZ6 603 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 CARD10Q9BWT7 1032 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 KCNG1Q9UIX4 513 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 ZKSCAN5Q9Y2L8 839 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 PLCD1P51178 756 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 PPP2R5DQ14738 602 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 ATP6V0A1Q93050 837 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 RILPQ96NA2 401 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 SPECC1L-ADORA2AF8WAN1 911 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 TTC4O95801 387 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 PDZD8Q8NEN9 1154 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 CTTNBP2NLQ9P2B4 639 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 TPCN1Q9ULQ1 816 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 TMPOP42166 694 aaKnown RBP8.76□□□□□ -1.01
SYNE1-210ENST00000409694 OGFOD1Q8N543 542 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 PPP1R9AQ9ULJ8 1098 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 STX8Q9UNK0 236 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 DTHD1Q6ZMT9 781 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 FAM212AQ96EL1 285 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 CD2APQ9Y5K6 639 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 BCRP11274 1271 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 STRN3Q13033 797 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 CERS3Q8IU89 383 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 TEKT2Q9UIF3 430 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 RAP1GDS1P52306 607 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 ASIC2Q16515 512 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 UTP14CQ5TAP6 766 aaKnown RBP8.76□□□□□ -1.01
SYNE1-210ENST00000409694 IQUBQ8NA54 791 aa8.76□□□□□ -1.01
SYNE1-210ENST00000409694 HIP1RO75146 1068 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 RFX1P22670 979 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 DCAF17Q5H9S7 520 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-210ENST00000409694 LRCH2Q5VUJ6 765 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 NACA2Q9H009 215 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 ARHGAP42A6NI28 874 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 TEKT1Q969V4 418 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 LRGUKQ96M69 825 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 ANGPTL3Q9Y5C1 460 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.75□□□□□ -1.01
SYNE1-210ENST00000409694 SPTLC2O15270 562 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 SV2BQ7L1I2 683 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 GIMAP4Q9NUV9 329 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 SCHIP1Q9P0W5 487 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-210ENST00000409694 KLHL14Q9P2G3 628 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 C6orf229H3BNL8 230 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 CFAP221Q4G0U5 840 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 LZTFL1Q9NQ48 299 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 IMPACTQ9P2X3 320 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 LPXNO60711 386 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 ISM2Q6H9L7 571 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 RUNDC3BQ96NL0 473 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 CCDC68Q9H2F9 335 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 TTC22Q5TAA0 569 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 FLOT1O75955 427 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 DEUP1Q05D60 604 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 TYRO3Q06418 890 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 SLFN5Q08AF3 891 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 CCDC85AQ96PX6 553 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-210ENST00000409694 HNRNPCL2B2RXH8 293 aa8.75□□□□□ -1.01
SYNE1-210ENST00000409694 HNRNPCL1O60812 293 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms