RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 WDHD1O75717 1129 aaPredicted RBP15.53■□□□□ 0.08
VPS54-203ENST00000409558 EPB41L4AQ9HCS5 686 aaPredicted RBP15.53■□□□□ 0.08
VPS54-203ENST00000409558 IFNKQ9P0W0 207 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 IGSF3O75054 1194 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 TNNT1P13805 278 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 CHRNDQ07001 517 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 ZSCAN25Q6NSZ9 544 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 LINC00301Q8NCQ3 95 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 LPIN2Q92539 896 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 C8orf37Q96NL8 207 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 ERICH2A1L162 156 aa15.52■□□□□ 0.08
VPS54-203ENST00000409558 ANO1Q5XXA6 986 aa15.52■□□□□ 0.08
VPS54-203ENST00000409558 GPR101Q96P66 508 aaPredicted RBP15.52■□□□□ 0.08
VPS54-203ENST00000409558 PFKFB1P16118 471 aa15.52■□□□□ 0.08
VPS54-203ENST00000409558 KIAA1524Q8TCG1 905 aa15.52■□□□□ 0.08
VPS54-203ENST00000409558 STRBPQ96SI9 672 aaKnown RBP15.52■□□□□ 0.08
VPS54-203ENST00000409558 SRP68Q9UHB9 627 aaKnown RBP15.52■□□□□ 0.08
VPS54-203ENST00000409558 KLHL10Q6JEL2 608 aa15.52■□□□□ 0.07
VPS54-203ENST00000409558 UBAC1Q9BSL1 405 aa15.52■□□□□ 0.07
VPS54-203ENST00000409558 CCDC87Q9NVE4 849 aa15.52■□□□□ 0.07
VPS54-203ENST00000409558 RRP9O43818 475 aaKnown RBP15.52■□□□□ 0.07
VPS54-203ENST00000409558 ATP1A3P13637 1013 aa15.52■□□□□ 0.07
VPS54-203ENST00000409558 CBX1P83916 185 aa15.52■□□□□ 0.07
VPS54-203ENST00000409558 ANO10Q9NW15 660 aa15.52■□□□□ 0.07
VPS54-203ENST00000409558 SKILP12757 684 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 KLRK1P26718 216 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 GRIN1Q05586 938 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 CASP1P29466 404 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 SYKP43405 635 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 KIF23Q02241 960 aaPredicted RBP15.51■□□□□ 0.07
VPS54-203ENST00000409558 ERFEQ4G0M1 354 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 TRPM3Q9HCF6 1732 aaPredicted RBP15.51■□□□□ 0.07
VPS54-203ENST00000409558 KDM4FA0A1W2PPD8 638 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 FAM47AQ5JRC9 791 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 TACC3Q9Y6A5 838 aa15.51■□□□□ 0.07
VPS54-203ENST00000409558 FAM205CA6NFA0 338 aa15.5■□□□□ 0.07
VPS54-203ENST00000409558 ADGRA1Q86SQ6 560 aa15.5■□□□□ 0.07
VPS54-203ENST00000409558 TTF1Q15361 905 aaPredicted RBP15.5■□□□□ 0.07
VPS54-203ENST00000409558 TRMT44Q8IYL2 757 aaKnown RBP15.5■□□□□ 0.07
VPS54-203ENST00000409558 NMT2O60551 498 aa15.5■□□□□ 0.07
VPS54-203ENST00000409558 SERPINC1P01008 464 aa15.5■□□□□ 0.07
VPS54-203ENST00000409558 SSRP1Q08945 709 aaKnown RBP15.5■□□□□ 0.07
VPS54-203ENST00000409558 WTAPQ15007 396 aa15.5■□□□□ 0.07
VPS54-203ENST00000409558 VPS54Q9P1Q0 977 aa15.5■□□□□ 0.07
VPS54-203ENST00000409558 AKAP17AQ02040 695 aaKnown RBP15.49■□□□□ 0.07
VPS54-203ENST00000409558 CCDC152Q4G0S7 254 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 GLIPR1L2Q4G1C9 344 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 MARCH10Q8NA82 808 aaPredicted RBP15.49■□□□□ 0.07
VPS54-203ENST00000409558 ALDH8A1Q9H2A2 487 aaPredicted RBP15.49■□□□□ 0.07
VPS54-203ENST00000409558 CABP5Q9NP86 173 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 AFMP43652 599 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 OXER1Q8TDS5 423 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 NACAP1Q9BZK3 213 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 AATFQ9NY61 560 aaKnown RBP eCLIP15.49■□□□□ 0.07
VPS54-203ENST00000409558 SCN11AQ9UI33 1791 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 MROH7-TTC4A0A0A0MT08 1334 aa15.49■□□□□ 0.07
VPS54-203ENST00000409558 XPO4Q9C0E2 1151 aaKnown RBP15.49■□□□□ 0.07
VPS54-203ENST00000409558 SH2B2O14492 632 aaPredicted RBP15.48■□□□□ 0.07
VPS54-203ENST00000409558 CFAP100Q494V2 611 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 DIS3L2Q8IYB7 885 aaKnown RBP15.48■□□□□ 0.07
VPS54-203ENST00000409558 CNNM3Q8NE01 707 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 UTRNP46939 3433 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 CELF1Q92879 486 aaKnown RBP15.48■□□□□ 0.07
VPS54-203ENST00000409558 UQCRFS1P1P0C7P4 283 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 STX17P56962 302 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 RTN1Q16799 776 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 ADALQ6DHV7 355 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 NGLY1Q96IV0 654 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 ADAMTSL3P82987 1691 aa15.48■□□□□ 0.07
VPS54-203ENST00000409558 GSG1L2A8MUP6 293 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 TRIM28Q13263 835 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 IQCB1Q15051 598 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 SAFBQ15424 915 aaKnown RBP eCLIP15.47■□□□□ 0.07
VPS54-203ENST00000409558 FMR1NBQ8N0W7 255 aaPredicted RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 KIAA1468Q9P260 1216 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 USP49Q70CQ1 688 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 PATL2C9JE40 543 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 CDK11BP21127 795 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 IL6STP40189 918 aaPredicted RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 INTS5Q6P9B9 1019 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 DHX40Q8IX18 779 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 KCNG4Q8TDN1 519 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 SART3Q15020 963 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 AKNAD1Q5T1N1 836 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 HOMER1Q86YM7 354 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 ANKRD18AQ8IVF6 992 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 TRIM22Q8IYM9 498 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 VGLL2Q8N8G2 317 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 TDRD7Q8NHU6 1098 aaKnown RBP15.47■□□□□ 0.07
VPS54-203ENST00000409558 LY9Q9HBG7 655 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 RTEL1Q9NZ71 1219 aa15.47■□□□□ 0.07
VPS54-203ENST00000409558 RIC1Q4ADV7 1423 aa15.46■□□□□ 0.07
VPS54-203ENST00000409558 NAT10Q9H0A0 1025 aaKnown RBP15.46■□□□□ 0.07
VPS54-203ENST00000409558 BCL2L12Q9HB09 334 aa15.46■□□□□ 0.07
VPS54-203ENST00000409558 JCADQ9P266 1359 aa15.46■□□□□ 0.07
VPS54-203ENST00000409558 ENGASEQ8NFI3 743 aa15.46■□□□□ 0.07
VPS54-203ENST00000409558 CPLX3Q8WVH0 158 aa15.46■□□□□ 0.07
VPS54-203ENST00000409558 V9GY48 417 aaPredicted RBP15.46■□□□□ 0.07
VPS54-203ENST00000409558 LONRF3Q496Y0 759 aa15.46■□□□□ 0.06
VPS54-203ENST00000409558 NOM1Q5C9Z4 860 aaKnown RBP15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms