RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 GNL2Q13823 731 aaKnown RBP13.43□□□□□ -0.26
SMARCA1-201ENST00000371121 CT47A1Q5JQC4 288 aaPredicted RBP13.43□□□□□ -0.26
SMARCA1-201ENST00000371121 KSR2Q6VAB6 950 aa13.43□□□□□ -0.26
SMARCA1-201ENST00000371121 DDX46Q7L014 1031 aaKnown RBP13.43□□□□□ -0.26
SMARCA1-201ENST00000371121 AK7Q96M32 723 aa13.43□□□□□ -0.26
SMARCA1-201ENST00000371121 NCAPGQ9BPX3 1015 aa13.43□□□□□ -0.26
SMARCA1-201ENST00000371121 A0A1B0GUL7 405 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 CASP8Q14790 479 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 E2F4Q16254 413 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 MCMDC2Q4G0Z9 681 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 C19orf44Q9H6X5 657 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 C9orf78Q9NZ63 289 aaPredicted RBP13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 SH3TC1Q8TE82 1336 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 UBE2Q2LH0YL09 131 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 KIF23Q02241 960 aaPredicted RBP13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 ZNF274Q96GC6 653 aaPredicted RBP13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 RFX7Q2KHR2 1363 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 ZSCAN12O43309 604 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 PHACTR2O75167 634 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 PTPN12Q05209 780 aaKnown RBP13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 TTC31Q49AM3 519 aaPredicted RBP13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 FBXL16Q8N461 479 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 CNNM3Q8NE01 707 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 DBNDD2Q9BQY9 259 aa13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 U3KPZ7 1027 aaPredicted RBP13.42□□□□□ -0.26
SMARCA1-201ENST00000371121 CCP110O43303 1012 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 TOP1P11387 765 aaKnown RBP13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 TFCP2Q12800 502 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 TNNI3KQ59H18 835 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 SUGP1Q8IWZ8 645 aaKnown RBP13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 DENND2AQ9ULE3 1009 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 ADGRG1Q9Y653 693 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 FPGT-TNNI3KV9GXZ4 949 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 RNF225M0QZC1 329 aaPredicted RBP13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 SERPINC1P01008 464 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 AMPHP49418 695 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 TEFQ10587 303 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 KCNG4Q8TDN1 519 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 HAUS7Q99871 368 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 BRMS1Q9HCU9 246 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 CWC15Q9P013 229 aaKnown RBP13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 TEX33O43247 280 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 GRIN1Q05586 938 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 ANO1Q5XXA6 986 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 RAB11FIP4Q86YS3 637 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 CCDC12Q8WUD4 166 aaPredicted RBP13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 RIN2Q8WYP3 895 aaPredicted RBP13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 SLC26A8Q96RN1 970 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 ARFGEF2Q9Y6D5 1785 aa13.41□□□□□ -0.26
SMARCA1-201ENST00000371121 PARP4Q9UKK3 1724 aaKnown RBP13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 NFAT5O94916 1531 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 HSPD1P10809 573 aaKnown RBP13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 ANTXR2P58335 489 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 NR1I3Q14994 352 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 EHD4Q9H223 541 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 FAM204AQ9H8W3 233 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 LZTFL1Q9NQ48 299 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 PCDHA5Q9Y5H7 936 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 AGPSO00116 658 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 PBX1P40424 430 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 AMPD2Q01433 879 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 SLC39A14Q15043 492 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 CTR9Q6PD62 1173 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 HDXQ7Z353 690 aa13.4□□□□□ -0.26
SMARCA1-201ENST00000371121 G3BP1Q13283 466 aaKnown RBP eCLIP13.39□□□□□ -0.272e-8■■□□□ 12.5
SMARCA1-201ENST00000371121 STK38Q15208 465 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 EP400NLQ6ZTU2 488 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 SAMSN1Q9NSI8 373 aaKnown RBP13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 EXOC5O00471 708 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 IVLP07476 585 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 ARHGAP25P42331 645 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 SF3A1Q15459 793 aaKnown RBP13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 SWT1Q5T5J6 900 aaKnown RBP13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 RESP18Q5W5W9 173 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 SPECC1LQ69YQ0 1117 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 LRP10Q7Z4F1 713 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 TRMT44Q8IYL2 757 aaKnown RBP13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 DBF4Q9UBU7 674 aaPredicted RBP13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 CDC23Q9UJX2 597 aa13.39□□□□□ -0.27
SMARCA1-201ENST00000371121 SHOX2O60902 331 aaPredicted RBP13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 RHOXF2BP0C7M4 288 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 AARSP49588 968 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 LTV1Q96GA3 475 aaPredicted RBP13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 CDC5LQ99459 802 aaKnown RBP13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 RHOXF2Q9BQY4 288 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 RNF216Q9NWF9 866 aaPredicted RBP13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 PKD1L3Q7Z443 1732 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 BCL9LQ86UU0 1499 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 M0R2C6 588 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 SARSP49591 514 aaKnown RBP13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 ZNF827Q17R98 1081 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 LINS1Q8NG48 757 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 MAST3O60307 1309 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 TJP1Q07157 1748 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 MYBL2P10244 700 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 NBPF3Q9H094 633 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 GLI3P10071 1580 aa13.38□□□□□ -0.27
SMARCA1-201ENST00000371121 NT5DC1Q5TFE4 455 aa13.37□□□□□ -0.27
SMARCA1-201ENST00000371121 JAKMIP3Q5VZ66 844 aa13.37□□□□□ -0.27
SMARCA1-201ENST00000371121 SYKP43405 635 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms