RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 FKBP1CQ5VVH2 108 aa20.7■□□□□ 0.9
CLN3-203ENST00000357806 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-203ENST00000357806 FAM163AQ96GL9 167 aaPredicted RBP20.7■□□□□ 0.9
CLN3-203ENST00000357806 LAMB1P07942 1786 aa20.7■□□□□ 0.9
CLN3-203ENST00000357806 LDHCP07864 332 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 VEGFBP49765 207 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 CACNB3P54284 484 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 TTLL12Q14166 644 aaPredicted RBP20.69■□□□□ 0.9
CLN3-203ENST00000357806 FAM83AQ86UY5 434 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 JMYQ8N9B5 988 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 RPAP1Q9BWH6 1393 aaPredicted RBP20.69■□□□□ 0.9
CLN3-203ENST00000357806 SUPT20HL1Q3ZLR7 823 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 CDC42EP5Q6NZY7 148 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 ZNF384Q8TF68 577 aa20.69■□□□□ 0.9
CLN3-203ENST00000357806 WDR33Q9C0J8 1336 aaKnown RBP20.68■□□□□ 0.9
CLN3-203ENST00000357806 BTDP43251 543 aa20.68■□□□□ 0.9
CLN3-203ENST00000357806 CYP4F22Q6NT55 531 aa20.68■□□□□ 0.9
CLN3-203ENST00000357806 GCC1Q96CN9 775 aa20.68■□□□□ 0.9
CLN3-203ENST00000357806 CAPNS2Q96L46 248 aa20.68■□□□□ 0.9
CLN3-203ENST00000357806 PIH1D3Q9NQM4 214 aaKnown RBP20.68■□□□□ 0.9
CLN3-203ENST00000357806 USP40Q9NVE5 1235 aa20.68■□□□□ 0.9
CLN3-203ENST00000357806 NDUFB9Q9Y6M9 179 aa20.68■□□□□ 0.9
CLN3-203ENST00000357806 MYH1P12882 1939 aa20.67■□□□□ 0.9
CLN3-203ENST00000357806 TTF1Q15361 905 aaPredicted RBP20.67■□□□□ 0.9
CLN3-203ENST00000357806 NBPF12Q5TAG4 269 aaPredicted RBP20.67■□□□□ 0.9
CLN3-203ENST00000357806 NAA16Q6N069 864 aaPredicted RBP20.67■□□□□ 0.9
CLN3-203ENST00000357806 ARMC9Q7Z3E5 817 aa20.67■□□□□ 0.9
CLN3-203ENST00000357806 TMEM39BQ9GZU3 492 aa20.67■□□□□ 0.9
CLN3-203ENST00000357806 GPR75-ASB3A0A0A6YYF3 556 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 PPP1R12BO60237 982 aaPredicted RBP20.66■□□□□ 0.9
CLN3-203ENST00000357806 IDH1O75874 414 aaKnown RBP20.66■□□□□ 0.9
CLN3-203ENST00000357806 ATP5JP18859 108 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 GRM1Q13255 1194 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 RGMBQ6NW40 437 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 GPATCH3Q96I76 525 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 TEPSINQ96N21 525 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 DNAJC2Q99543 621 aaKnown RBP20.66■□□□□ 0.9
CLN3-203ENST00000357806 NOL10Q9BSC4 688 aaKnown RBP20.66■□□□□ 0.9
CLN3-203ENST00000357806 ZBTB47Q9UFB7 747 aaPredicted RBP20.66■□□□□ 0.9
CLN3-203ENST00000357806 RFX7Q2KHR2 1363 aa20.66■□□□□ 0.9
CLN3-203ENST00000357806 PRKG1Q13976 671 aa20.65■□□□□ 0.9
CLN3-203ENST00000357806 MOB2Q70IA6 237 aa20.65■□□□□ 0.9
CLN3-203ENST00000357806 ANTXR1Q9H6X2 564 aa20.65■□□□□ 0.9
CLN3-203ENST00000357806 NAV1Q8NEY1 1877 aa20.64■□□□□ 0.9
CLN3-203ENST00000357806 IRX6P78412 446 aaPredicted RBP20.64■□□□□ 0.89
CLN3-203ENST00000357806 MAP3K12Q12852 859 aa20.64■□□□□ 0.89
CLN3-203ENST00000357806 FAM151AQ8WW52 585 aa20.64■□□□□ 0.89
CLN3-203ENST00000357806 RWDD1Q9H446 243 aaPredicted RBP20.64■□□□□ 0.89
CLN3-203ENST00000357806 ANGEL1Q9UNK9 670 aaKnown RBP20.64■□□□□ 0.89
CLN3-203ENST00000357806 MAP4K4O95819 1239 aaPredicted RBP20.63■□□□□ 0.89
CLN3-203ENST00000357806 ZNF157P51786 506 aaPredicted RBP20.63■□□□□ 0.89
CLN3-203ENST00000357806 TCP10Q12799 353 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 NFIAQ12857 509 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 TMED8Q6PL24 325 aaPredicted RBP20.63■□□□□ 0.89
CLN3-203ENST00000357806 CDAN1Q8IWY9 1227 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 HOOK2Q96ED9 719 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 IDI2Q9BXS1 227 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 BOLA2Q9H3K6 86 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 ECHDC1Q9NTX5 307 aa20.63■□□□□ 0.89
CLN3-203ENST00000357806 UBE2Q2LH0YL09 131 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 GOLIM4O00461 696 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 BAG3O95817 575 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 MAP3K11Q16584 847 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 CCDC102AQ96A19 550 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 HAUS7Q99871 368 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 PAG1Q9NWQ8 432 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 FAM198AQ9UFP1 575 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 ATAD5Q96QE3 1844 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 IREB2P48200 963 aaKnown RBP20.62■□□□□ 0.89
CLN3-203ENST00000357806 RHBDL3P58872 404 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 MAGEB6Q8N7X4 407 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 AATFQ9NY61 560 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-203ENST00000357806 FZD1Q9UP38 647 aa20.62■□□□□ 0.89
CLN3-203ENST00000357806 ENTPD3O75355 529 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 WDHD1O75717 1129 aaPredicted RBP20.61■□□□□ 0.89
CLN3-203ENST00000357806 SLC10A3P09131 477 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 PLCG2P16885 1265 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 CYP7A1P22680 504 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 RGS3P49796 1198 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 NOGQ13253 232 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 ANKRD45Q5TZF3 282 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 ADGRA1Q86SQ6 560 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 SIPA1L1O43166 1804 aa20.61■□□□□ 0.89
CLN3-203ENST00000357806 TTC41PQ6P2S7 1318 aa20.6■□□□□ 0.89
CLN3-203ENST00000357806 DOCK1Q14185 1865 aa20.6■□□□□ 0.89
CLN3-203ENST00000357806 COL2A1P02458 1487 aaPredicted RBP20.6■□□□□ 0.89
CLN3-203ENST00000357806 MAP2K2P36507 400 aa20.6■□□□□ 0.89
CLN3-203ENST00000357806 PICALMQ13492 652 aa20.6■□□□□ 0.89
CLN3-203ENST00000357806 RASAL3Q86YV0 1011 aa20.6■□□□□ 0.89
CLN3-203ENST00000357806 DDX60LQ5H9U9 1706 aaKnown RBP20.6■□□□□ 0.89
CLN3-203ENST00000357806 UNCXA6NJT0 531 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 FAM155AB1AL88 458 aaPredicted RBP20.59■□□□□ 0.89
CLN3-203ENST00000357806 AOC2O75106 756 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 LDLRAD1Q5T700 205 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 DCAF15Q66K64 600 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 CERS3Q8IU89 383 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 SMC5Q8IY18 1101 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 TEX11Q8IYF3 940 aa20.59■□□□□ 0.89
CLN3-203ENST00000357806 EDC3Q96F86 508 aaKnown RBP20.59■□□□□ 0.89
CLN3-203ENST00000357806 MYH8P13535 1937 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms