RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CDC42EP5Q6NZY7 148 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 MYH2Q9UKX2 1941 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 DNAH12Q6ZR08 3092 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 SPDYE2BA6NHP3 402 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 SPDYE6P0CI01 402 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 TNIP1Q15025 636 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 NAA16Q6N069 864 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 SH3BP5LQ7L8J4 393 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 AGBL3Q8NEM8 1001 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 DPF2Q92785 391 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 GPATCH3Q96I76 525 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 STRBPQ96SI9 672 aaKnown RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 MKRN1Q9UHC7 482 aaKnown RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 GPR75-ASB3A0A0A6YYF3 556 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 MBD4O95243 580 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 BTDP43251 543 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 RBM5P52756 815 aaKnown RBP eCLIP4.87□□□□□ -1.63
LIG4-201ENST00000356922 DZIP1Q86YF9 867 aaKnown RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 TBC1D22AQ8WUA7 517 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 FAM163AQ96GL9 167 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 L3MBTL3Q96JM7 780 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 EPB41L4AQ9HCS5 686 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 FAM198AQ9UFP1 575 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 GAKO14976 1311 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 MROH7-TTC4A0A0A0MT08 1334 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 GSG1L2A8MUP6 293 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 TCP10Q12799 353 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 MAP3K12Q12852 859 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 SHROOM1Q2M3G4 852 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 CNTROBQ8N137 903 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 ZDHHC15Q96MV8 337 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 TAF1DQ9H5J8 278 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 PGAP2Q9UHJ9 254 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 GPAA1O43292 621 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 CYP2D6P10635 497 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 FKBP1AP62942 108 aaKnown RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 UBE3CQ15386 1083 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 DPY19L2Q6NUT2 758 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 HHIPL2Q6UWX4 724 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 STK11IPQ8N1F8 1099 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 SERPINA10Q9UK55 444 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 CNTNAP1P78357 1384 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 DDTLA6NHG4 134 aaPredicted RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 FAM196BA6NMK8 535 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 TCP10L2B9ZVM9 353 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 SGSM2O43147 1006 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 PLCD1P51178 756 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 TTF1Q15361 905 aaPredicted RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 TGFBRAP1Q8WUH2 860 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 APPBP2Q92624 585 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 TEKT1Q969V4 418 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 ESYT1Q9BSJ8 1104 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 TMEM39BQ9GZU3 492 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 NBPF3Q9H094 633 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 USP40Q9NVE5 1235 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 PALD1Q9ULE6 856 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 HSPD1P10809 573 aaKnown RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 EPHX2P34913 555 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 ANGEL2Q5VTE6 544 aaKnown RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 MAP1SQ66K74 1059 aaPredicted RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 MAPKAPK5Q8IW41 473 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 ZNF70Q9UC06 446 aaPredicted RBP4.86□□□□□ -1.63
LIG4-201ENST00000356922 HACL1Q9UJ83 578 aa4.86□□□□□ -1.63
LIG4-201ENST00000356922 TRAF5O00463 557 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 KIF3CO14782 793 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 FGAP02671 866 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 PPP4CP60510 307 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 JAG1P78504 1218 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 PICALMQ13492 652 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 RRP1BQ14684 758 aaKnown RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 DLGAP5Q15398 846 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 KIF4BQ2VIQ3 1234 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 MCMDC2Q4G0Z9 681 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 EAPPQ56P03 285 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 OGFOD1Q8N543 542 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 ZNF784Q8NCA9 323 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 TEPSINQ96N21 525 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 MRIQ9BWK5 157 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 LSG1Q9H089 658 aaKnown RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 SAP30BPQ9UHR5 308 aaKnown RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 AK9Q5TCS8 1911 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 MAGEB6P1A0A0J9YX57 407 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 ADM5C9JUS6 153 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 RPS12P25398 132 aaKnown RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 RASEFQ8IZ41 740 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 DCP1AQ9NPI6 582 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 SUGT1Q9Y2Z0 365 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 MYH7P12883 1935 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 BAZ2AQ9UIF9 1905 aaKnown RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 RPAP1Q9BWH6 1393 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 CDK5RAP2Q96SN8 1893 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 H7C1D1 291 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 SPTY2D1Q68D10 685 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 MOB2Q70IA6 237 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 MTMR14Q8NCE2 650 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 SLC44A5Q8NCS7 719 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 DYNLL2Q96FJ2 89 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 GLIS2Q9BZE0 524 aaPredicted RBP4.85□□□□□ -1.63
LIG4-201ENST00000356922 DNAJC18Q9H819 358 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms