RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GBP6Q6ZN66 633 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 GTF3C6Q969F1 213 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 TRIM35Q9UPQ4 493 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 IQGAP1P46940 1657 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 MED14O60244 1454 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 CTNNBL1Q8WYA6 563 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 ANKRD2Q9GZV1 360 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 KCNH3Q9ULD8 1083 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 ZNF521Q96K83 1311 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 UGGT1Q9NYU2 1555 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 PCP11498 1178 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 IL13P35225 146 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 RBM6P78332 1123 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 SETDB1Q15047 1291 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 EFCAB8A8MWE9 144 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 SLC27A2O14975 620 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 XAGE3Q8WTP9 111 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 MAGI2Q86UL8 1455 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 ZSCAN29Q8IWY8 852 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 VPS18Q9P253 973 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 PPFIA3O75145 1194 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 NEBLO76041 1014 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 IDEP14735 1019 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 ZNF804AQ7Z570 1209 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 GNA14O95837 355 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 WHAMMP3Q1A5X7 153 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 TCERG1LQ5VWI1 586 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 IGSF22Q8N9C0 903 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 NOX5Q96PH1 765 aa11.57□□□□□ -0.56
CCDC88A-202ENST00000336838 E9PCH4 1651 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 CCDC122Q5T0U0 273 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 SLC9C2Q5TAH2 1124 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 WDR78Q5VTH9 848 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 TSHZ3Q63HK5 1081 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 TAOK1Q7L7X3 1001 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 ZNF274Q96GC6 653 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 KRT79Q5XKE5 535 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 KIAA1524Q8TCG1 905 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 ABCA9Q8IUA7 1624 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 GLI2P10070 1586 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 APBA1Q02410 837 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 UTP14CQ5TAP6 766 aaKnown RBP11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 ADALQ6DHV7 355 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 C10orf67Q8IYJ2 551 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 IP6K1Q92551 441 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 SEC24BO95487 1268 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 LACTBP83111 547 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 METTL22Q9BUU2 404 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 UBA5Q9GZZ9 404 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 MCTP2Q6DN12 878 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 HS2ST1Q7LGA3 356 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 STIM2Q9P246 746 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 USH1CQ9Y6N9 552 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 ERBB4Q15303 1308 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 CLTCL1P53675 1640 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 PSDA5PKW4 1024 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 FERP16591 822 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 UBL4BQ8N7F7 174 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 TRIM7Q9C029 511 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 SLC4A4Q9Y6R1 1079 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 ADGRL3Q9HAR2 1447 aa11.56□□□□□ -0.56
CCDC88A-202ENST00000336838 ZRANB1Q9UGI0 708 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 FEZ2Q9UHY8 353 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 B4DLN1 442 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 MRPL12P52815 198 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 CCDC110Q8TBZ0 833 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 PTCD1O75127 700 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 ZNF202O95125 648 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 ZNF569Q5MCW4 686 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 KBTBD3Q8NAB2 608 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 SMC6Q96SB8 1091 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 MAGEB6P1A0A0J9YX57 407 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 FAM177BA6PVY3 158 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 CCDC14Q49A88 953 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 CPLX4Q7Z7G2 160 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 CEP63Q96MT8 703 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 RIOK3O14730 519 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 SYT10Q6XYQ8 523 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 STAP2Q9UGK3 403 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 A0A1W2PQ27 194 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 A0A1W2PQ64 194 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 A0A1W2PQD8 194 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 GOLGA6CA6NDK9 693 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 GOLGA6DP0CG33 693 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 PRPF4BQ13523 1007 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 PLBD2Q8NHP8 589 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 GOLGA6AQ9NYA3 693 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 PARP2Q9UGN5 583 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 UTP11Q9Y3A2 253 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 A2ML1A8K2U0 1454 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 TRIM37O94972 964 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 CALCOCO2Q13137 446 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 PAK2Q13177 524 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 HAUS3Q68CZ6 603 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 ZNF830Q96NB3 372 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 SNX14Q9Y5W7 946 aa11.55□□□□□ -0.56
CCDC88A-202ENST00000336838 HAND2P61296 217 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 IRX3P78415 501 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 CCDC65Q8IXS2 484 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 APPBP2Q92624 585 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms