RNA–Protein interactions for RNA: ENST00000292729.12

USP41-201, Transcript of ubiquitin specific peptidase 41, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene USP41, Length 920 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP41-201ENST00000292729 LRCH3Q96II8 777 aa13.23□□□□□ -0.29
USP41-201ENST00000292729 FAM84BQ96KN1 310 aaPredicted RBP13.23□□□□□ -0.29
USP41-201ENST00000292729 KCNH4Q9UQ05 1017 aa13.23□□□□□ -0.29
USP41-201ENST00000292729 ECM2O94769 699 aaPredicted RBP13.22□□□□□ -0.29
USP41-201ENST00000292729 BMP8BP34820 402 aa13.22□□□□□ -0.29
USP41-201ENST00000292729 GYG1P46976 350 aa13.22□□□□□ -0.29
USP41-201ENST00000292729 PRKCZQ05513 592 aa13.22□□□□□ -0.29
USP41-201ENST00000292729 LMBR1LQ6UX01 489 aa13.22□□□□□ -0.29
USP41-201ENST00000292729 PARK7Q99497 189 aaKnown RBP13.22□□□□□ -0.29
USP41-201ENST00000292729 UNC93B1Q9H1C4 597 aa13.22□□□□□ -0.29
USP41-201ENST00000292729 MAST3O60307 1309 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 LAMA3Q16787 3333 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 BCRP11274 1271 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 PXYLP1Q8TE99 480 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 ZDHHC15Q96MV8 337 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 STAP2Q9UGK3 403 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 STXBP5LQ9Y2K9 1186 aa13.21□□□□□ -0.29
USP41-201ENST00000292729 ADCY3O60266 1144 aa13.2□□□□□ -0.3
USP41-201ENST00000292729 TFRCP02786 760 aaKnown RBP13.2□□□□□ -0.3
USP41-201ENST00000292729 CACNB3P54284 484 aa13.2□□□□□ -0.3
USP41-201ENST00000292729 VPS37DQ86XT2 251 aa13.2□□□□□ -0.3
USP41-201ENST00000292729 ZNF594Q96JF6 807 aaPredicted RBP13.2□□□□□ -0.3
USP41-201ENST00000292729 ZNF112Q9UJU3 913 aa13.2□□□□□ -0.3
USP41-201ENST00000292729 SUGT1Q9Y2Z0 365 aa13.2□□□□□ -0.3
USP41-201ENST00000292729 MYH13Q9UKX3 1938 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 A0A0C4DFX4 3053 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 CXCL11O14625 94 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 IRF5Q13568 498 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 DEFB123Q8N688 67 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 TSR2Q969E8 191 aaKnown RBP13.19□□□□□ -0.3
USP41-201ENST00000292729 GDF15Q99988 308 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 GABRQQ9UN88 632 aa13.19□□□□□ -0.3
USP41-201ENST00000292729 MROH5Q6ZUA9 1318 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 FRAT2O75474 233 aaPredicted RBP13.18□□□□□ -0.3
USP41-201ENST00000292729 INHAP05111 366 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 INPP5BP32019 993 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 MOGSQ13724 837 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 LRIT3Q3SXY7 679 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 CAVIN4Q5BKX8 364 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 NOL9Q5SY16 702 aaKnown RBP13.18□□□□□ -0.3
USP41-201ENST00000292729 HHIPL2Q6UWX4 724 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 MIGA2Q7L4E1 593 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 NECAB2Q7Z6G3 386 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 FBXO33Q7Z6M2 555 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 ANKLE1Q8NAG6 615 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 FAM151AQ8WW52 585 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 DEFB118Q96PH6 123 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 CRISPLD2Q9H0B8 497 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 PAK6Q9NQU5 681 aaPredicted RBP13.18□□□□□ -0.3
USP41-201ENST00000292729 DOCK3Q8IZD9 2030 aa13.18□□□□□ -0.3
USP41-201ENST00000292729 PTPRFP10586 1907 aa13.17□□□□□ -0.3
USP41-201ENST00000292729 FLT3LGP49771 235 aa13.17□□□□□ -0.3
USP41-201ENST00000292729 CHAF1AQ13111 956 aaPredicted RBP13.17□□□□□ -0.3
USP41-201ENST00000292729 GRIK5Q16478 980 aa13.17□□□□□ -0.3
USP41-201ENST00000292729 EPHA10Q5JZY3 1008 aa13.17□□□□□ -0.3
USP41-201ENST00000292729 BEND3Q5T5X7 828 aa13.17□□□□□ -0.3
USP41-201ENST00000292729 APOBEC3HQ6NTF7 200 aaKnown RBP13.17□□□□□ -0.3
USP41-201ENST00000292729 FASTKD5Q7L8L6 764 aaKnown RBP13.17□□□□□ -0.3
USP41-201ENST00000292729 SLC45A1Q9Y2W3 748 aa13.17□□□□□ -0.3
USP41-201ENST00000292729 GRM8O00222 908 aa13.16□□□□□ -0.3
USP41-201ENST00000292729 CYP2C8P10632 490 aa13.16□□□□□ -0.3
USP41-201ENST00000292729 CCDC27Q2M243 656 aa13.16□□□□□ -0.3
USP41-201ENST00000292729 GPAT2Q6NUI2 795 aa13.16□□□□□ -0.3
USP41-201ENST00000292729 PAWRQ96IZ0 340 aaKnown RBP13.16□□□□□ -0.3
USP41-201ENST00000292729 DOCK2Q92608 1830 aa13.16□□□□□ -0.3
USP41-201ENST00000292729 TNPO2O14787 897 aaKnown RBP13.15□□□□□ -0.3
USP41-201ENST00000292729 ELNP15502 786 aa13.15□□□□□ -0.3
USP41-201ENST00000292729 MTMR10Q9NXD2 777 aa13.15□□□□□ -0.3
USP41-201ENST00000292729 C9orf78Q9NZ63 289 aaPredicted RBP13.15□□□□□ -0.3
USP41-201ENST00000292729 IQSEC3Q9UPP2 1182 aaPredicted RBP13.15□□□□□ -0.3
USP41-201ENST00000292729 IL16Q14005 1332 aa13.14□□□□□ -0.31
USP41-201ENST00000292729 BCAMP50895 628 aa13.14□□□□□ -0.31
USP41-201ENST00000292729 TDHQ8IZJ6 230 aa13.14□□□□□ -0.31
USP41-201ENST00000292729 COA7Q96BR5 231 aa13.14□□□□□ -0.31
USP41-201ENST00000292729 PUS3Q9BZE2 481 aaKnown RBP13.14□□□□□ -0.31
USP41-201ENST00000292729 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
USP41-201ENST00000292729 DDX60LQ5H9U9 1706 aaKnown RBP13.13□□□□□ -0.31
USP41-201ENST00000292729 A0A0G2JLL6 359 aaPredicted RBP13.13□□□□□ -0.31
USP41-201ENST00000292729 DDX10Q13206 875 aaKnown RBP13.13□□□□□ -0.31
USP41-201ENST00000292729 PRRT2Q7Z6L0 340 aaPredicted RBP13.13□□□□□ -0.31
USP41-201ENST00000292729 C7orf61Q8IZ16 206 aa13.13□□□□□ -0.31
USP41-201ENST00000292729 COL25A1Q9BXS0 654 aaPredicted RBP13.13□□□□□ -0.31
USP41-201ENST00000292729 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP41-201ENST00000292729 PHIPQ8WWQ0 1821 aa13.13□□□□□ -0.31
USP41-201ENST00000292729 DOCK1Q14185 1865 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 F6X3S4 739 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 VAMP4O75379 141 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 ALDH1L1O75891 902 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 PDE8BO95263 885 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 Q7L0L9 218 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 WWC1Q8IX03 1113 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 SCYL3Q8IZE3 742 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 WDR66Q8TBY9 1149 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 SMCR8Q8TEV9 937 aaPredicted RBP13.12□□□□□ -0.31
USP41-201ENST00000292729 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 PICK1Q9NRD5 415 aa13.12□□□□□ -0.31
USP41-201ENST00000292729 ZMYND8Q9ULU4 1186 aaPredicted RBP13.12□□□□□ -0.31
USP41-201ENST00000292729 TCP10Q12799 353 aa13.11□□□□□ -0.31
USP41-201ENST00000292729 NCBP3Q53F19 620 aaKnown RBP13.11□□□□□ -0.31
USP41-201ENST00000292729 METTL24Q5JXM2 366 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms