RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KRBA2Q6ZNG9 492 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 SHROOM2Q13796 1616 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 CLNS1AP54105 237 aaKnown RBP14.39□□□□□ -0.11
USP40-201ENST00000251722 GCKRQ14397 625 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 DPY19L2Q6NUT2 758 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 DTHD1Q6ZMT9 781 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 TAX1BP1Q86VP1 789 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 MYRIPQ8NFW9 859 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 JARID2Q92833 1246 aaPredicted RBP14.39□□□□□ -0.11
USP40-201ENST00000251722 DEXIO95424 95 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 TBC1D2Q9BYX2 928 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 ZBTB40Q9NUA8 1239 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 GJA3Q9Y6H8 435 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 ARAP3Q8WWN8 1544 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 N4BP3O15049 544 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 ASIC1P78348 528 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 CREB3L3Q68CJ9 461 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 RPUSD2Q8IZ73 545 aaKnown RBP14.38□□□□□ -0.11
USP40-201ENST00000251722 CARD10Q9BWT7 1032 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 PTPRTO14522 1441 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 CCDC65Q8IXS2 484 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 SMC5Q8IY18 1101 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 EBAG9O00559 213 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 MBD4O95243 580 aa14.38□□□□□ -0.11
USP40-201ENST00000251722 CCDC117Q8IWD4 279 aaPredicted RBP14.38□□□□□ -0.11
USP40-201ENST00000251722 SH3BGRP55822 239 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 CCDC97Q96F63 343 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 NUCKS1Q9H1E3 243 aaKnown RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 IQSEC3Q9UPP2 1182 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 NT5C2P49902 561 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 KLHL40Q2TBA0 621 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 RILPL1Q5EBL4 403 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 RUFY3Q7L099 469 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 ZNF710Q8N1W2 664 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 SMTNP53814 917 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 SMC1AQ14683 1233 aaKnown RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 FAM177A1Q8N128 213 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 IQUBQ8NA54 791 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 ARPP21Q9UBL0 812 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 TMEM94Q12767 1356 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 CAPN2P17655 700 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 SELENOOQ9BVL4 669 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 SPTLC2O15270 562 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 IGSF3O75054 1194 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 CTNNBL1Q8WYA6 563 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 GPHNQ9NQX3 736 aaPredicted RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 USP25Q9UHP3 1055 aa14.37□□□□□ -0.11
USP40-201ENST00000251722 PUF60Q9UHX1 559 aaKnown RBP14.37□□□□□ -0.11
USP40-201ENST00000251722 PCP11498 1178 aaKnown RBP14.36□□□□□ -0.11
USP40-201ENST00000251722 ZNF165P49910 485 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 DLGAP5Q15398 846 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 RASAL2Q9UJF2 1139 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 SAMD9LQ8IVG5 1584 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 KIF3CO14782 793 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 BLMP54132 1417 aaPredicted RBP14.36□□□□□ -0.11
USP40-201ENST00000251722 ANKARQ7Z5J8 1434 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 SEMA3EO15041 775 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 XAGE2Q96GT9 111 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 PHACTR3Q96KR7 559 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 HOMER2Q9NSB8 354 aa14.36□□□□□ -0.11
USP40-201ENST00000251722 PA2G4Q9UQ80 394 aaKnown RBP14.36□□□□□ -0.11
USP40-201ENST00000251722 IFFO1Q0D2I5 559 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 KRT25Q7Z3Z0 450 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 PHKG2P15735 406 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 AKR1B10O60218 316 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 CEP57Q86XR8 500 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 KDRP35968 1356 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 F13A1P00488 732 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 FBLN1P23142 703 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 KRT83P78385 493 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 CC2D2BQ6DHV5 1058 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 BACH1O14867 736 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 SLC8A3P57103 927 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 HACE1Q8IYU2 909 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 IFT74Q96LB3 600 aa14.35□□□□□ -0.11
USP40-201ENST00000251722 KIF22Q14807 665 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 CHURC1Q8WUH1 139 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 FAM89AQ96GI7 184 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 GCKP35557 465 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 EIF4A1P60842 406 aaKnown RBP14.34□□□□□ -0.11
USP40-201ENST00000251722 MIGA1Q8NAN2 632 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 FSD2A1L4K1 749 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 RPS8P62241 208 aaKnown RBP14.34□□□□□ -0.11
USP40-201ENST00000251722 CEP135Q66GS9 1140 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 TMED8Q6PL24 325 aaPredicted RBP14.34□□□□□ -0.11
USP40-201ENST00000251722 LRSAM1Q6UWE0 723 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 PANK2Q9BZ23 570 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 BIN2Q9UBW5 565 aaPredicted RBP14.34□□□□□ -0.11
USP40-201ENST00000251722 ZMYM4Q5VZL5 1548 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 IGHDP01880 384 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 VWA3BQ502W6 1294 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 SV2BQ7L1I2 683 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 CEP112Q8N8E3 955 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 CSADQ9Y600 493 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 MAGI3Q5TCQ9 1506 aa14.34□□□□□ -0.11
USP40-201ENST00000251722 CHMLP26374 656 aa14.33□□□□□ -0.11
USP40-201ENST00000251722 NOP2P46087 812 aaKnown RBP14.33□□□□□ -0.11
USP40-201ENST00000251722 TEKT1Q969V4 418 aa14.33□□□□□ -0.11
USP40-201ENST00000251722 ARFGAP3Q9NP61 516 aa14.33□□□□□ -0.11
USP40-201ENST00000251722 NBPF11Q86T75 865 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms