RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SAT2Q96F10 170 aaPredicted RBP7.5□□□□□ -1.21
CLN3-261ENST00000637686 PRR25Q96S07 402 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 PFDN5Q99471 154 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 RNF2Q99496 336 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 PEMTQ9UBM1 199 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 UBQLN2Q9UHD9 624 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 RNF24Q9Y225 148 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 PXMP4Q9Y6I8 212 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 ELOA3CA0A087WX78 387 aaPredicted RBP7.49□□□□□ -1.21
CLN3-261ENST00000637686 IGHV3-35A0A0C4DH35 117 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 ZNF320A2RRD8 509 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 LGALS9O00182 355 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 CTSGP08311 255 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 LINC00869P0C866 280 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 M6PRP20645 277 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 B2MP61769 119 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 ACOT6Q3I5F7 207 aaPredicted RBP7.49□□□□□ -1.21
CLN3-261ENST00000637686 FAM106AQ4KMX7 169 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 TMEM41BQ5BJD5 291 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 DEFB121Q5J5C9 76 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 AKR1C8PQ5T2L2 129 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 ZNF600Q6ZNG1 722 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 STPG3Q8N7X2 389 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 OR51G1Q8NGK1 321 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 OR1L4Q8NGR5 311 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 GATAD1Q8WUU5 269 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 RSG1Q9BU20 258 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 SH3BGRL3Q9H299 93 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 SLC39A9Q9NUM3 307 aa7.49□□□□□ -1.21
CLN3-261ENST00000637686 ZNF256Q9Y2P7 627 aaPredicted RBP7.49□□□□□ -1.21
CLN3-261ENST00000637686 PRKDCP78527 4128 aaKnown RBP7.48□□□□□ -1.21
CLN3-261ENST00000637686 C2orf70A6NJV1 201 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 IGLV1-51P01701 117 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 RD3LP0DJH9 198 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 EDN2P20800 178 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 ADMP35318 185 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 BLOC1S1P78537 153 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 ALKAL2Q6UX46 152 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 UNQ9165/PRO28630Q6UXU0 137 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 ADAMTSL5Q6ZMM2 481 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 Q8WTZ3 238 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 CHRDL1Q9BU40 450 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 MRPL32Q9BYC8 188 aaKnown RBP7.48□□□□□ -1.21
CLN3-261ENST00000637686 SIGLEC8Q9NYZ4 499 aa7.48□□□□□ -1.21
CLN3-261ENST00000637686 TRAV1-1A0A0B4J248 108 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 TMEM213A2RRL7 107 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 NDUFA4O00483 81 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 YIF1AO95070 293 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 OR5G3P0C626 314 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 PSG1P11464 419 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 FOLR2P14207 255 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 GP9P14770 177 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 RAB14P61106 215 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 ZNF90Q03938 601 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 TIGITQ495A1 244 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 TM4SF20Q53R12 229 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 CLLU1Q5K131 121 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 FFAR4Q5NUL3 377 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 MIC13Q5XKP0 118 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 RPRMQ9NS64 109 aa7.47□□□□□ -1.21
CLN3-261ENST00000637686 CTXND1A0A1B0GTU2 59 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 IZUMO1RA6ND01 250 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 HYPMO75409 117 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 CBLN1P23435 193 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 ELLP55199 621 aaPredicted RBP7.46□□□□□ -1.22
CLN3-261ENST00000637686 RHOBP62745 196 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 PMS2P11Q13670 270 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 TMEM182Q6ZP80 229 aaPredicted RBP7.46□□□□□ -1.22
CLN3-261ENST00000637686 RPP25LQ8N5L8 163 aaKnown RBP7.46□□□□□ -1.22
CLN3-261ENST00000637686 LYPD6BQ8NI32 183 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 DYNLRB2Q8TF09 96 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 MBD3L1Q8WWY6 194 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 TMEM190Q8WZ59 177 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 RNF125Q96EQ8 232 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 ACTR3CQ9C0K3 210 aaPredicted RBP7.46□□□□□ -1.22
CLN3-261ENST00000637686 DNAJC4Q9NNZ3 241 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 PLA2G2EQ9NZK7 142 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 PFDN2Q9UHV9 154 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 UFC1Q9Y3C8 167 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 SELENOKQ9Y6D0 94 aa7.46□□□□□ -1.22
CLN3-261ENST00000637686 IGHV3OR16-8A0A075B7F1 116 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 A8MWP6 167 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 TEX46H3BTG2 121 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 K7EMT4 169 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 HBE1P02100 147 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 NMBP08949 121 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 CDC34P49427 236 aaPredicted RBP7.45□□□□□ -1.22
CLN3-261ENST00000637686 TAS2R45P59539 299 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 DEFB114Q30KQ6 69 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 CD300EQ496F6 205 aaPredicted RBP7.45□□□□□ -1.22
CLN3-261ENST00000637686 LCN12Q6JVE5 192 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 STXBP6Q8NFX7 210 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 OR10G4Q8NGN3 311 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 OR10G9Q8NGN4 311 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 OR10G7Q8NGN6 311 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 ZNF414Q96IQ9 312 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 C20orf24Q9BUV8 137 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 ZFAND3Q9H8U3 227 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 MED9Q9NWA0 146 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 TECRQ9NZ01 308 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms