RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DCANP1Q8TF63 244 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 PPP1R1CQ8WVI7 109 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 TMEM147Q9BVK8 224 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 NRN1Q9NPD7 142 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 UQCC1Q9NVA1 299 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 U3KQK5 164 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 IGHV3OR16-13A0A075B7E8 117 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 IGHV3-74A0A0B4J1X5 117 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 K7EQG2 157 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 MEOX2P50222 304 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 SIGLEC15Q6ZMC9 328 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 STPG3Q8N7X2 389 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 PBDC1Q9BVG4 233 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 GGTLC1Q9BX51 225 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 ALG5Q9Y673 324 aa13.59□□□□□ -0.23
CLN3-259ENST00000637551 LOC102724200A0A096LPH7 203 aaPredicted RBP13.58□□□□□ -0.24
CLN3-259ENST00000637551 UBE2CO00762 179 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 CCNKO75909 580 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 APOC4P55056 127 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 RPL11P62913 178 aaKnown RBP13.58□□□□□ -0.24
CLN3-259ENST00000637551 ARL16Q0P5N6 197 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 OXA1LQ15070 435 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 HAGHQ16775 308 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 MAP6D1Q9H9H5 199 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 WDR83OSQ9Y284 106 aa13.58□□□□□ -0.24
CLN3-259ENST00000637551 FAM24AA6NFZ4 105 aa13.57□□□□□ -0.24
CLN3-259ENST00000637551 MPC2O95563 127 aa13.57□□□□□ -0.24
CLN3-259ENST00000637551 RAP2BP61225 183 aa13.57□□□□□ -0.24
CLN3-259ENST00000637551 RRAS2P62070 204 aaPredicted RBP13.57□□□□□ -0.24
CLN3-259ENST00000637551 SNRPD3P62318 126 aaKnown RBP13.57□□□□□ -0.24
CLN3-259ENST00000637551 ELOA3CA0A087WX78 387 aaPredicted RBP13.56□□□□□ -0.24
CLN3-259ENST00000637551 IGSF23A1L1A6 192 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 RBMY1BA6NDE4 496 aaKnown RBP13.56□□□□□ -0.24
CLN3-259ENST00000637551 RBMY1EA6NEQ0 496 aaKnown RBP13.56□□□□□ -0.24
CLN3-259ENST00000637551 AGPAT2O15120 278 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 HYPMO75409 117 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 CST7O76096 145 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 SIX6O95475 246 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 RBMY1DP0C7P1 496 aaKnown RBP13.56□□□□□ -0.24
CLN3-259ENST00000637551 LINC00869P0C866 280 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 LYL1P12980 280 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 OR2F1Q13607 317 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 STXBP6Q8NFX7 210 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 OR1B1Q8NGR6 318 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 MED28Q9H204 178 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 KCNIP2Q9NS61 270 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 TP53TG1Q9Y2A0 90 aa13.56□□□□□ -0.24
CLN3-259ENST00000637551 IGHV3-66A0A0C4DH42 116 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 ZNF98A6NK75 572 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 GALR1P47211 349 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 RPL29P47914 159 aaKnown RBP13.55□□□□□ -0.24
CLN3-259ENST00000637551 Q6ZWC4 215 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 OR8I2Q8N0Y5 310 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 PPP1R14BQ96C90 147 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 WWC2-AS2Q96NR7 200 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 SHANK2-AS3Q9BTD1 123 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 WFDC10AQ9H1F0 79 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 HIGD1AQ9Y241 93 aa13.55□□□□□ -0.24
CLN3-259ENST00000637551 H0YIZ8 118 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 H3BRN7 92 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 RPL7P18124 248 aaKnown RBP13.54□□□□□ -0.24
CLN3-259ENST00000637551 CAMLGP49069 296 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 PSMB3P49720 205 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 EWSR1Q01844 656 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLN3-259ENST00000637551 FGL1Q08830 312 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 TMEM41BQ5BJD5 291 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 TMEM217Q8N7C4 229 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 CITED4Q96RK1 184 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 OR5AC2Q9NZP5 309 aa13.54□□□□□ -0.24
CLN3-259ENST00000637551 RYR2Q92736 4967 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 ISLRO14498 428 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 GIPP09681 153 aaPredicted RBP13.53□□□□□ -0.24
CLN3-259ENST00000637551 ORM2P19652 201 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 PRR20EP86478 221 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 PRR20CP86479 221 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 PRR20DP86480 221 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 PRR20BP86481 221 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 PRR20AP86496 221 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 LRRC37A5PQ49AS3 106 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 Q6ZRG5 221 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 GBGT1Q8N5D6 347 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 RCHY1Q96PM5 261 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 PFDN5Q99471 154 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 MGST2Q99735 147 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 RNF126Q9BV68 326 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 SLC25A39Q9BZJ4 359 aaPredicted RBP13.53□□□□□ -0.24
CLN3-259ENST00000637551 SELENOKQ9Y6D0 94 aa13.53□□□□□ -0.24
CLN3-259ENST00000637551 ID1P41134 155 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 TFPI2P48307 235 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 OPCMLQ14982 345 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 SPATA31B1PQ5VZV4 182 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 TMEM182Q6ZP80 229 aaPredicted RBP13.52□□□□□ -0.25
CLN3-259ENST00000637551 OR5C1Q8NGR4 320 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 OR1L4Q8NGR5 311 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 ASCL2Q99929 193 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 UBQLN2Q9UHD9 624 aa13.52□□□□□ -0.25
CLN3-259ENST00000637551 IGKV3-7A0A075B6H7 116 aa13.51□□□□□ -0.25
CLN3-259ENST00000637551 CXCL2P19875 107 aa13.51□□□□□ -0.25
CLN3-259ENST00000637551 GATA2P23769 480 aaPredicted RBP13.51□□□□□ -0.25
CLN3-259ENST00000637551 DEFB131AP59861 70 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms