RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OR8G2PQ6IF36 304 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 FOXI2Q6ZQN5 318 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 PPP1R14BQ96C90 147 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 DKK2Q9UBU2 259 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 CACFD1Q9UGQ2 172 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 SCP2D1Q9UJQ7 156 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 RFNGQ9Y644 331 aa11.51□□□□□ -0.57
CLN3-246ENST00000636228 DNAH11Q96DT5 4516 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 TMEM189A5PLL7 270 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 SMIM9A6NGZ8 99 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 SNRPGP15A8MWD9 76 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 PSMB3P49720 205 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 ZNF79Q15937 498 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 FAM78BQ5VT40 261 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 OR8I2Q8N0Y5 310 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 C1orf158Q8N1D5 194 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 C20orf173Q96LM9 149 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 SCGB3A2Q96PL1 93 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 PFDN2Q9UHV9 154 aa11.5□□□□□ -0.57
CLN3-246ENST00000636228 IFNA21P01568 189 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 NUP62P37198 522 aaPredicted RBP11.49□□□□□ -0.57
CLN3-246ENST00000636228 PSG9Q00887 426 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 C1orf194Q5T5A4 169 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 EBLN2Q6P2I7 272 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 UBE2DNLQ8IWF7 75 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 C7orf50Q9BRJ6 194 aaKnown RBP11.49□□□□□ -0.57
CLN3-246ENST00000636228 NIPSNAP3BQ9BS92 247 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 PKD1P98161 4303 aa11.49□□□□□ -0.57
CLN3-246ENST00000636228 IGKV1OR2-108A0A075B7D4 117 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 PRM2P04554 102 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 ANXA3P12429 323 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 LGALS9BQ3B8N2 356 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 TMED4Q7Z7H5 227 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 MCFD2Q8NI22 146 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 C17orf77Q96MU5 243 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 SLC25A22Q9H936 323 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 YTHDF2Q9Y5A9 579 aaKnown RBP11.48□□□□□ -0.57
CLN3-246ENST00000636228 PKHD1P08F94 4074 aa11.48□□□□□ -0.57
CLN3-246ENST00000636228 A0A0J9YX75 114 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 LOC102723971A0A1B0GUV8 181 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 PITX3O75364 302 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 GATA2P23769 480 aaPredicted RBP11.47□□□□□ -0.57
CLN3-246ENST00000636228 TNFSF8P32971 234 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 ATP5IP56385 69 aaPredicted RBP11.47□□□□□ -0.57
CLN3-246ENST00000636228 CNPY1Q3B7I2 92 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 IGFL4Q6B9Z1 124 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 C16orf92Q96LL3 132 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 CLUHP3Q96NS8 147 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 TRGV9Q99603 122 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 SOSTQ9BQB4 213 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 RSG1Q9BU20 258 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 MAGT1Q9H0U3 335 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 SLC25A32Q9H2D1 315 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 GOLT1BQ9Y3E0 138 aa11.47□□□□□ -0.57
CLN3-246ENST00000636228 FABP12A6NFH5 140 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 ISLRO14498 428 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 HBE1P02100 147 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 FABP1P07148 127 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 PAX9P55771 341 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 RAB11AP62491 216 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 SRPXP78539 464 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 TMEM182Q6ZP80 229 aaPredicted RBP11.46□□□□□ -0.57
CLN3-246ENST00000636228 RPRMQ9NS64 109 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 RABL2AQ9UBK7 228 aaPredicted RBP11.46□□□□□ -0.57
CLN3-246ENST00000636228 RABL2BQ9UNT1 228 aa11.46□□□□□ -0.57
CLN3-246ENST00000636228 RYR1P21817 5038 aa11.46□□□□□ -0.58
CLN3-246ENST00000636228 MED14OSP0DP75 135 aa11.45□□□□□ -0.58
CLN3-246ENST00000636228 ORM2P19652 201 aa11.45□□□□□ -0.58
CLN3-246ENST00000636228 SPATA31B1PQ5VZV4 182 aa11.45□□□□□ -0.58
CLN3-246ENST00000636228 TMEM88Q6PEY1 159 aa11.45□□□□□ -0.58
CLN3-246ENST00000636228 THAP8Q8NA92 274 aa11.45□□□□□ -0.58
CLN3-246ENST00000636228 DOK5Q9P104 306 aa11.45□□□□□ -0.58
CLN3-246ENST00000636228 ZNF98A6NK75 572 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 WRBO00258 174 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 VAMP1P23763 118 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 DAD1P61803 113 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 RRN3P1Q2M238 152 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 Q6ZR54 194 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 FAM210BQ96KR6 192 aa11.44□□□□□ -0.58
CLN3-246ENST00000636228 ABCA13Q86UQ4 5058 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 ZNF705GA8MUZ8 300 aaPredicted RBP11.43□□□□□ -0.58
CLN3-246ENST00000636228 PRSS46E5RG02 174 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 PRB4P10163 310 aaPredicted RBP11.43□□□□□ -0.58
CLN3-246ENST00000636228 GALR1P47211 349 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 AMTNQ6UX39 209 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 RNF182Q8N6D2 247 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 TMEM208Q9BTX3 173 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 PTTG2Q9NZH5 202 aa11.43□□□□□ -0.58
CLN3-246ENST00000636228 TEX48A0A1B0GUV7 120 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 DUXBA0A1W2PPF3 345 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 H3BP45 60 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 M0R2Z0 102 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 HOXB5P09067 269 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 MEOX2P50222 304 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 FGL1Q08830 312 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 OXA1LQ15070 435 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 SPINK13Q1W4C9 94 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 PYDC2Q56P42 97 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 TMEM128Q5BJH2 165 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms