RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 K7EMT4 169 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 IL4P05112 153 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 ZP3P21754 424 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 RAB2AP61019 212 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 LYZP61626 148 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 KLF5Q13887 457 aaPredicted RBP6.15□□□□□ -1.42
CPNE3-209ENST00000620393 RPEL1Q2QD12 228 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 GCSAMLQ5JQS6 135 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 FAM74A1Q5RGS3 127 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 DPPA3Q6W0C5 159 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 Q8N3U1 123 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 OR1B1Q8NGR6 318 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 LRRC20Q8TCA0 184 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 RNF125Q96EQ8 232 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 RCC1LQ96I51 464 aaKnown RBP6.15□□□□□ -1.42
CPNE3-209ENST00000620393 PFDN5Q99471 154 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 RNF2Q99496 336 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 ACTR3CQ9C0K3 210 aaPredicted RBP6.15□□□□□ -1.42
CPNE3-209ENST00000620393 UBQLN2Q9UHD9 624 aa6.15□□□□□ -1.42
CPNE3-209ENST00000620393 A0A1W2PPV4 95 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 A0A1W2PRX2 142 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 ZNF320A2RRD8 509 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 SEC14L6B5MCN3 397 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 CCL24O00175 119 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 LGALS9O00182 355 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 RGS13O14921 159 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 COX7A2P2O60397 106 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 OR5G3P0C626 314 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 NPPCP23582 126 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 S100A7P31151 101 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 HOXD3P31249 432 aaPredicted RBP6.14□□□□□ -1.43
CPNE3-209ENST00000620393 MYCNOSP40205 109 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 FHITP49789 147 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 RHOBP62745 196 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 USF2Q15853 346 aaPredicted RBP6.14□□□□□ -1.43
CPNE3-209ENST00000620393 DEFB136Q30KP8 78 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 NSUN5P1Q3KNT7 163 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 C10orf113Q5VZT2 155 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 FAM122CQ6P4D5 195 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 UNQ9165/PRO28630Q6UXU0 137 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 S100A7AQ86SG5 101 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 MBD3L1Q8WWY6 194 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 SAT2Q96F10 170 aaPredicted RBP6.14□□□□□ -1.43
CPNE3-209ENST00000620393 RAX2Q96IS3 184 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 CITED1Q99966 193 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 ZNF747Q9BV97 191 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 PBDC1Q9BVG4 233 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 SEPSECSQ9HD40 501 aaKnown RBP6.14□□□□□ -1.43
CPNE3-209ENST00000620393 DOK5Q9P104 306 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 RABAC1Q9UI14 185 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 HIGD1AQ9Y241 93 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 U3KQE9 123 aa6.14□□□□□ -1.43
CPNE3-209ENST00000620393 IGHV3OR16-8A0A075B7F1 116 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 ZNF705EA8MWA4 302 aaPredicted RBP6.13□□□□□ -1.43
CPNE3-209ENST00000620393 CRYBB3P26998 211 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 SYNJ2BPP57105 145 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 RAB14P61106 215 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 BLOC1S1P78537 153 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 FHL3Q13643 280 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 ZNF726P1Q15940 193 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 FAM78BQ5VT40 261 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 SPATA31B1PQ5VZV4 182 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 LINC00305Q7Z4B0 112 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 REC114Q7Z4M0 266 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 C1QL4Q86Z23 238 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 FAM213BQ8TBF2 198 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 TMEM190Q8WZ59 177 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 RAB24Q969Q5 203 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 DUX3Q96PT4 197 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 METTL26Q96S19 204 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 SHANK2-AS3Q9BTD1 123 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 C20orf24Q9BUV8 137 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 MRPL32Q9BYC8 188 aaKnown RBP6.13□□□□□ -1.43
CPNE3-209ENST00000620393 SLC25A39Q9BZJ4 359 aaPredicted RBP6.13□□□□□ -1.43
CPNE3-209ENST00000620393 PFDN2Q9UHV9 154 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 FUT9Q9Y231 359 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 UFC1Q9Y3C8 167 aa6.13□□□□□ -1.43
CPNE3-209ENST00000620393 SETD2Q9BYW2 2564 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-209ENST00000620393 TRAV1-1A0A0B4J248 108 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 TRAV5A0A0B4J249 113 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 CTXND1A0A1B0GTU2 59 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 ZNF98A6NK75 572 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 ZNF207O43670 478 aaKnown RBP6.12□□□□□ -1.43
CPNE3-209ENST00000620393 H2AFB1P0C5Y9 115 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 STAG3L2P0CL84 134 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 STAG3L3P0CL85 134 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 C8orf88P0DMB2 117 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 CDC34P49427 236 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-209ENST00000620393 SLURP1P55000 103 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 TM4SF20Q53R12 229 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 C12orf54Q6X4T0 127 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 MIR17HGQ75NE6 70 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 C3orf56Q8N813 242 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 SFT2D1Q8WV19 159 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 DLX4Q92988 240 aaPredicted RBP6.12□□□□□ -1.43
CPNE3-209ENST00000620393 FAM167A-AS1Q96KT0 104 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 UHRF2Q96PU4 802 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 TECRQ9NZ01 308 aaKnown RBP6.12□□□□□ -1.43
CPNE3-209ENST00000620393 SMPXQ9UHP9 88 aa6.12□□□□□ -1.43
CPNE3-209ENST00000620393 RNF24Q9Y225 148 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms