RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ID1P41134 155 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 SUPT4H1P63272 117 aaKnown RBP4.25□□□□□ -1.73
VRK3-220ENST00000600259 KLF9Q13886 244 aaPredicted RBP4.25□□□□□ -1.73
VRK3-220ENST00000600259 ETFRF1Q6IPR1 90 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 SPATA12Q7Z6I5 190 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 TMEM229BQ8NBD8 167 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 RBPMSQ93062 196 aaKnown RBP4.25□□□□□ -1.73
VRK3-220ENST00000600259 COPZ2Q9P299 210 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 GPR132Q9UNW8 380 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 TMED3Q9Y3Q3 217 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 TRAV8-2A0A0B4J237 113 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 CBY3A6NI87 242 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 CRYM-AS1A6NIL9 109 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 XGP55808 180 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 NCS1P62166 190 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 RNASE12Q5GAN4 147 aaKnown RBP4.24□□□□□ -1.73
VRK3-220ENST00000600259 EBLN2Q6P2I7 272 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 NOXA1Q86UR1 476 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 CCDC71LQ8N9Z2 235 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 OR11H7Q8NGC8 314 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 RNF141Q8WVD5 230 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 C7orf50Q9BRJ6 194 aaKnown RBP4.24□□□□□ -1.73
VRK3-220ENST00000600259 ATG101Q9BSB4 218 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 PBDC1Q9BVG4 233 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 MAGT1Q9H0U3 335 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 NAA60Q9H7X0 242 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 Q9H8V8 135 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 RPRMQ9NS64 109 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 DOK5Q9P104 306 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 HSPB7Q9UBY9 170 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 U3KQ87 197 aa4.24□□□□□ -1.73
VRK3-220ENST00000600259 FLG2Q5D862 2391 aaPredicted RBP4.23□□□□□ -1.73
VRK3-220ENST00000600259 ZNF98A6NK75 572 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 SNRPGP15A8MWD9 76 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 F5H768 121 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 M0R2Z0 102 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 RAB3DO95716 219 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 NUDT3O95989 172 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 SULT1A3P0DMM9 295 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 SULT1A4P0DMN0 295 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 DEFB130BP0DP73 79 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 DEFB130AP0DP74 79 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 NUP62P37198 522 aaPredicted RBP4.23□□□□□ -1.73
VRK3-220ENST00000600259 CNN1P51911 297 aaKnown RBP4.23□□□□□ -1.73
VRK3-220ENST00000600259 CCL18P55774 89 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 VBP1P61758 197 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 OR2F1Q13607 317 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 SPINK13Q1W4C9 94 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 TMEM268Q5VZI3 342 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 IGFL4Q6B9Z1 124 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 FAAP20Q6NZ36 180 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 STEAP1BQ6NZ63 245 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 TMEM182Q6ZP80 229 aaPredicted RBP4.23□□□□□ -1.73
VRK3-220ENST00000600259 Q6ZRN7 208 aaPredicted RBP4.23□□□□□ -1.73
VRK3-220ENST00000600259 SSX7Q7RTT5 188 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 OR8I2Q8N0Y5 310 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 LGI3Q8N145 548 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 LINC00612Q8N6U2 182 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 THAP8Q8NA92 274 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 COQ8AQ8NI60 647 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 RNASE11Q8TAA1 199 aaKnown RBP4.23□□□□□ -1.73
VRK3-220ENST00000600259 IL22RA2Q969J5 263 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 TRGV9Q99603 122 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 RSG1Q9BU20 258 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 SLC25A32Q9H2D1 315 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 MIXL1Q9H2W2 232 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 RBKSQ9H477 322 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 Q9H521 79 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 PRR13Q9NZ81 148 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 PFDN2Q9UHV9 154 aa4.23□□□□□ -1.73
VRK3-220ENST00000600259 ZFP92A6NM28 416 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 PRSS46E5RG02 174 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 PITX3O75364 302 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 ATP5G1P05496 136 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 ATP5G3P48201 142 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 MEOX2P50222 304 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 CCR6P51684 374 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 ATP5IP56385 69 aaPredicted RBP4.22□□□□□ -1.73
VRK3-220ENST00000600259 TAS2R19P59542 299 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 LYZP61626 148 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 B2MP61769 119 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 SURF2Q15527 256 aaPredicted RBP4.22□□□□□ -1.73
VRK3-220ENST00000600259 ESRGQ1W209 222 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 SCGB2B2Q4G0G5 96 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 GPR107Q5VW38 600 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 LYZL2Q7Z4W2 148 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 BAP18Q8IXM2 172 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 OR4D5Q8NGN0 318 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 DTD1Q8TEA8 209 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 C16orf92Q96LL3 132 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 FAM210AQ96ND0 272 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 UHRF2Q96PU4 802 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 UPK3BQ9BT76 320 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 FUNDC2Q9BWH2 189 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 Q9H3A6 140 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 EXTL2Q9UBQ6 330 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 CACFD1Q9UGQ2 172 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 SLC45A2Q9UMX9 530 aa4.22□□□□□ -1.73
VRK3-220ENST00000600259 TRAV12-2A0A075B6T6 113 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms