RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 LOC102724200A0A096LPH7 203 aaPredicted RBP11.27□□□□□ -0.61
LIG1-219ENST00000600055 TRAV2A0A0B4J234 112 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 PET100P0DJ07 73 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 ORM2P19652 201 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 DEFB131AP59861 70 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 SIGLEC15Q6ZMC9 328 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 DCANP1Q8TF63 244 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 PPP1R14BQ96C90 147 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 GGACTQ9BVM4 153 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 GGTLC1Q9BX51 225 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 DOK5Q9P104 306 aa11.27□□□□□ -0.61
LIG1-219ENST00000600055 HELTA6NFD8 242 aa11.26□□□□□ -0.61
LIG1-219ENST00000600055 CFDP00746 253 aaPredicted RBP11.26□□□□□ -0.61
LIG1-219ENST00000600055 RPL35AP18077 110 aaKnown RBP11.26□□□□□ -0.61
LIG1-219ENST00000600055 SULT1A1P50225 295 aa11.26□□□□□ -0.61
LIG1-219ENST00000600055 CMC4P56277 68 aaPredicted RBP11.26□□□□□ -0.61
LIG1-219ENST00000600055 LEMD1Q68G75 181 aa11.26□□□□□ -0.61
LIG1-219ENST00000600055 TEPPQ6URK8 271 aa11.26□□□□□ -0.61
LIG1-219ENST00000600055 OR1B1Q8NGR6 318 aa11.26□□□□□ -0.61
LIG1-219ENST00000600055 PPP1R1CQ8WVI7 109 aa11.26□□□□□ -0.61
LIG1-219ENST00000600055 ZNF688P0C7X2 276 aa11.25□□□□□ -0.61
LIG1-219ENST00000600055 LINC00869P0C866 280 aa11.25□□□□□ -0.61
LIG1-219ENST00000600055 NUP62P37198 522 aaPredicted RBP11.25□□□□□ -0.61
LIG1-219ENST00000600055 AP2S1P53680 142 aaPredicted RBP11.25□□□□□ -0.61
LIG1-219ENST00000600055 FGL1Q08830 312 aa11.25□□□□□ -0.61
LIG1-219ENST00000600055 MGST2Q99735 147 aa11.25□□□□□ -0.61
LIG1-219ENST00000600055 SPATA25Q9BR10 227 aa11.25□□□□□ -0.61
LIG1-219ENST00000600055 PFDN2Q9UHV9 154 aa11.25□□□□□ -0.61
LIG1-219ENST00000600055 E5RGE8 158 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 AGPAT2O15120 278 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 CXCL3P19876 107 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 NHLH2Q02577 135 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 FCN2Q15485 313 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 C1orf194Q5T5A4 169 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 STX12Q86Y82 276 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 RNF126Q9BV68 326 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 TMEM147Q9BVK8 224 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 SLC25A22Q9H936 323 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 NRN1Q9NPD7 142 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 SLC45A2Q9UMX9 530 aa11.24□□□□□ -0.61
LIG1-219ENST00000600055 ZNF98A6NK75 572 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 GIPP09681 153 aaPredicted RBP11.23□□□□□ -0.61
LIG1-219ENST00000600055 S100A11P31949 105 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 PLP1P60201 277 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 RAP2BP61225 183 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 SELENOTP62341 195 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 EWSR1Q01844 656 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG1-219ENST00000600055 VWC2Q2TAL6 325 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 PATE2Q6UY27 113 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 OR8I2Q8N0Y5 310 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 SCRT1Q9BWW7 348 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 ARL6Q9H0F7 186 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 SLC25A32Q9H2D1 315 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 UQCC1Q9NVA1 299 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 WDR83OSQ9Y284 106 aa11.23□□□□□ -0.61
LIG1-219ENST00000600055 UBE2L5PA0A1B0GUS4 154 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 KNCNA6PVL3 124 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 H3BRN7 92 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 HYPMO75409 117 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 MPC2O95563 127 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 OR5G3P0C626 314 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 HBG1P69891 147 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 HBG2P69892 147 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 ZNF546Q86UE3 836 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 THAP6Q8TBB0 222 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 WWC2-AS2Q96NR7 200 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 UHRF2Q96PU4 802 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 SLC25A39Q9BZJ4 359 aaPredicted RBP11.22□□□□□ -0.61
LIG1-219ENST00000600055 FBXL17Q9UF56 701 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 HIGD1AQ9Y241 93 aa11.22□□□□□ -0.61
LIG1-219ENST00000600055 CAMLGP49069 296 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 APOC4P55056 127 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 PSMG4Q5JS54 123 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 MIC13Q5XKP0 118 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 OR11H7Q8NGC8 314 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 C17orf77Q96MU5 243 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 SHANK2-AS3Q9BTD1 123 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 SLC25A31Q9H0C2 315 aa11.21□□□□□ -0.61
LIG1-219ENST00000600055 FGF7P21781 194 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 BAXQ07812 192 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 ATP6V1FQ16864 119 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 OR5C1Q8NGR4 320 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 OVOL2Q9BRP0 275 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 RSG1Q9BU20 258 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 MBD2Q9UBB5 411 aa11.2□□□□□ -0.62
LIG1-219ENST00000600055 SOCS3O14543 225 aa11.19□□□□□ -0.62
LIG1-219ENST00000600055 GALR1P47211 349 aa11.19□□□□□ -0.62
LIG1-219ENST00000600055 RAB31Q13636 194 aa11.19□□□□□ -0.62
LIG1-219ENST00000600055 CLINT1Q14677 625 aa11.19□□□□□ -0.62
LIG1-219ENST00000600055 ARV1Q9H2C2 271 aa11.19□□□□□ -0.62
LIG1-219ENST00000600055 KIR2DL5BA0A0G2JN68 375 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 KIR2DL5BA0A0G2JPC4 375 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 DEFB1P60022 68 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 SNRPD3P62318 126 aaKnown RBP11.18□□□□□ -0.62
LIG1-219ENST00000600055 PRR20EP86478 221 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 PRR20CP86479 221 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 PRR20DP86480 221 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 PRR20BP86481 221 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 PRR20AP86496 221 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 OPCMLQ14982 345 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms