RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 IMMP2LQ96T52 175 aa16.7■□□□□ 0.26
UPF1-207ENST00000599848 TUBGCP6Q96RT7 1819 aa16.7■□□□□ 0.26
UPF1-207ENST00000599848 B3GALT5-AS1P59052 145 aa16.7■□□□□ 0.26
UPF1-207ENST00000599848 A0A0G2JMZ2 1700 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 LRRC37A2A6NM11 1700 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 CGB3P0DN86 165 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 HEATR5BQ9P2D3 2071 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 H3BUA1 57 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 TNFRSF6BO95407 300 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 C1orf194Q5T5A4 169 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 ACACAQ13085 2346 aa16.69■□□□□ 0.26
UPF1-207ENST00000599848 THADAQ6YHU6 1953 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 NPIPB5A8MRT5 1133 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 TBX6O95947 436 aaPredicted RBP16.68■□□□□ 0.26
UPF1-207ENST00000599848 SPTBP11277 2137 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 M0R2P5 195 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 EFNA2O43921 213 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 GAS1P54826 345 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 FOXG1P55316 489 aaPredicted RBP16.68■□□□□ 0.26
UPF1-207ENST00000599848 IGKCP01834 107 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 MYMXA0A1B0GTQ4 84 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 PAQR4Q8N4S7 273 aaPredicted RBP16.68■□□□□ 0.26
UPF1-207ENST00000599848 DNAJC30Q96LL9 226 aa16.68■□□□□ 0.26
UPF1-207ENST00000599848 IGHV3-53P01767 116 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 FOXL2NBQ6ZUU3 175 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 PRSS33Q8NF86 280 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 CEP250Q9BV73 2442 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 DOCK3Q8IZD9 2030 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 TREML4Q6UXN2 200 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 PIP4P1Q86T03 277 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 ANAPC10Q9UM13 185 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 LAMTOR2Q9Y2Q5 125 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 TSSC4Q9Y5U2 329 aaPredicted RBP16.67■□□□□ 0.26
UPF1-207ENST00000599848 A0A1B0GWB2 263 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 SELLP14151 372 aa16.67■□□□□ 0.26
UPF1-207ENST00000599848 SRSF4Q08170 494 aaKnown RBP16.67■□□□□ 0.26
UPF1-207ENST00000599848 TRPT1Q86TN4 253 aaKnown RBP16.67■□□□□ 0.26
UPF1-207ENST00000599848 LINC00614P0C842 121 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 C5orf30Q96GV9 206 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 MRPL27Q9P0M9 148 aaKnown RBP16.66■□□□□ 0.26
UPF1-207ENST00000599848 PATJQ8NI35 1801 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 IGKV2-40A0A087WW87 121 aaPredicted RBP16.66■□□□□ 0.26
UPF1-207ENST00000599848 IGKV2D-40P01614 121 aaPredicted RBP16.66■□□□□ 0.26
UPF1-207ENST00000599848 TCRAP04437 139 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 NMSQ5H8A3 153 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 C10orf55Q5SWW7 151 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 TRBV25-1A0A075B6N4 114 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 TRAV2A0A0B4J234 112 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 CGB7P0DN87 165 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 RPL32P62910 135 aaKnown RBP16.66■□□□□ 0.26
UPF1-207ENST00000599848 SRSF6Q13247 344 aaKnown RBP16.66■□□□□ 0.26
UPF1-207ENST00000599848 MBD3L1Q8WWY6 194 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 C1orf159Q96HA4 380 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 GNB1LQ9BYB4 327 aa16.66■□□□□ 0.26
UPF1-207ENST00000599848 ESPL1Q14674 2120 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 A8MWV9 139 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 YPEL3P61236 119 aaPredicted RBP16.65■□□□□ 0.26
UPF1-207ENST00000599848 Q6ZS49 121 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 ANKRD36A6QL64 1941 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 LOC102724200A0A096LPH7 203 aaPredicted RBP16.65■□□□□ 0.26
UPF1-207ENST00000599848 GGTLC1Q9BX51 225 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 PGPEP1LA6NFU8 196 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 NDUFA4O00483 81 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 SCRT1Q9BWW7 348 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 PARD6GQ9BYG4 376 aaPredicted RBP16.65■□□□□ 0.26
UPF1-207ENST00000599848 CARHSP1Q9Y2V2 147 aaKnown RBP16.65■□□□□ 0.26
UPF1-207ENST00000599848 CLDN16Q9Y5I7 305 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 C9orf66Q5T8R8 295 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 IL17DQ8TAD2 202 aa16.65■□□□□ 0.26
UPF1-207ENST00000599848 RPL23P62829 140 aaKnown RBP16.64■□□□□ 0.25
UPF1-207ENST00000599848 DEFB113Q30KQ7 82 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 LY6G5BQ8NDX9 201 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 KLF12Q9Y4X4 402 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 IGKV1D-17A0A075B6S4 117 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 NKAPP1Q8N9T2 125 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 RALGAPA2Q2PPJ7 1873 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 LEPROTO15243 131 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 CD55P08174 381 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 IGF2-ASQ6U949 168 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 WFDC12Q8WWY7 111 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 IFI27L1Q96BM0 104 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 ZFC3H1O60293 1989 aaKnown RBP16.64■□□□□ 0.25
UPF1-207ENST00000599848 IGKV1-12A0A0C4DH73 117 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 IGKV1D-12P01611 117 aa16.64■□□□□ 0.25
UPF1-207ENST00000599848 LMO1P25800 156 aa16.63■□□□□ 0.25
UPF1-207ENST00000599848 C1QL4Q86Z23 238 aa16.63■□□□□ 0.25
UPF1-207ENST00000599848 INS-IGF2F8WCM5 200 aa16.63■□□□□ 0.25
UPF1-207ENST00000599848 CA1P00915 261 aaPredicted RBP16.63■□□□□ 0.25
UPF1-207ENST00000599848 PPIFP30405 207 aaKnown RBP16.63■□□□□ 0.25
UPF1-207ENST00000599848 PRR30Q53SZ7 412 aaPredicted RBP16.63■□□□□ 0.25
UPF1-207ENST00000599848 TFF1P04155 84 aa16.63■□□□□ 0.25
UPF1-207ENST00000599848 LGALS1P09382 135 aaKnown RBP16.63■□□□□ 0.25
UPF1-207ENST00000599848 HGFACQ04756 655 aa16.63■□□□□ 0.25
UPF1-207ENST00000599848 LY96Q9Y6Y9 160 aa16.63■□□□□ 0.25
UPF1-207ENST00000599848 NDPQ00604 133 aa16.62■□□□□ 0.25
UPF1-207ENST00000599848 LYPD2Q6UXB3 125 aa16.62■□□□□ 0.25
UPF1-207ENST00000599848 LAMTOR3Q9UHA4 124 aa16.62■□□□□ 0.25
UPF1-207ENST00000599848 RUSC1-AS1Q66K80 236 aa16.62■□□□□ 0.25
UPF1-207ENST00000599848 ZNF319Q9P2F9 582 aa16.62■□□□□ 0.25
UPF1-207ENST00000599848 ABCA4P78363 2273 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms