RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 APRG1Q8IVJ8 170 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 BPIFCQ8NFQ6 507 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 DCANP1Q8TF63 244 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 TMEM231Q9H6L2 316 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 SRD5A3Q9H8P0 318 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 UQCC1Q9NVA1 299 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 MBD2Q9UBB5 411 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 BMI1P35226 326 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 PLP1P60201 277 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 STXBP6Q8NFX7 210 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 OR1B1Q8NGR6 318 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 CHAC2Q8WUX2 184 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 TMEM147Q9BVK8 224 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 TUBA4BQ9H853 241 aa10.54□□□□□ -0.72
SHKBP1-217ENST00000598558 ZNF98A6NK75 572 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 CFDP00746 253 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 HAGHQ16775 308 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 MIC13Q5XKP0 118 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 LEMD1Q68G75 181 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 STX12Q86Y82 276 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 OR5C1Q8NGR4 320 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 GRAMD2BQ96HH9 432 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 NARS2Q96I59 477 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 SCRT1Q9BWW7 348 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 GGTLC1Q9BX51 225 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 SLC25A31Q9H0C2 315 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 MAP6D1Q9H9H5 199 aa10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 HUWE1Q7Z6Z7 4374 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-217ENST00000598558 UBE2L5PA0A1B0GUS4 154 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 G3V3Q6 166 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 DNASE2O00115 360 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 CD5P06127 495 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 RPL12P30050 165 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 CAMLGP49069 296 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 SELENOTP62341 195 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 PRR20EP86478 221 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 PRR20CP86479 221 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 PRR20DP86480 221 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 PRR20BP86481 221 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 PRR20AP86496 221 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 CLINT1Q14677 625 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 ATP6V1FQ16864 119 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 SIGLEC15Q6ZMC9 328 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 TMEM37Q8WXS4 190 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 UHRF2Q96PU4 802 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 SLC25A39Q9BZJ4 359 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 ARL6Q9H0F7 186 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 SLC25A32Q9H2D1 315 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 WFDC1Q9HC57 220 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 HSPB11Q9Y547 144 aa10.52□□□□□ -0.73
SHKBP1-217ENST00000598558 TRAV2A0A0B4J234 112 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 HELTA6NFD8 242 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 H3BRN7 92 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 HYPMO75409 117 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 GIPP09681 153 aaPredicted RBP10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 DEFB131AP59861 70 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 PAFAH1B2P68402 229 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 HBG1P69891 147 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 HBG2P69892 147 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 C1orf194Q5T5A4 169 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 MORN5Q5VZ52 161 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 THAP6Q8TBB0 222 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 PPP1R14BQ96C90 147 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 FAM110AQ9BQ89 295 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 SHANK2-AS3Q9BTD1 123 aa10.51□□□□□ -0.73
SHKBP1-217ENST00000598558 COL7A1Q02388 2944 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 OR5G3P0C626 314 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 ZNF688P0C7X2 276 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 FGF7P21781 194 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 BAXQ07812 192 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 OPCMLQ14982 345 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 ZNF546Q86UE3 836 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 TM2D3Q9BRN9 247 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 SMIM3Q9BZL3 60 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 ARV1Q9H2C2 271 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 SLC25A22Q9H936 323 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 RETNQ9HD89 108 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 NRN1Q9NPD7 142 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 HIGD1AQ9Y241 93 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 RFNGQ9Y644 331 aa10.5□□□□□ -0.73
SHKBP1-217ENST00000598558 SOCS3O14543 225 aa10.49□□□□□ -0.73
SHKBP1-217ENST00000598558 NHLRC4P0CG21 123 aaPredicted RBP10.49□□□□□ -0.73
SHKBP1-217ENST00000598558 RPL29P47914 159 aaKnown RBP10.49□□□□□ -0.73
SHKBP1-217ENST00000598558 AP2S1P53680 142 aaPredicted RBP10.49□□□□□ -0.73
SHKBP1-217ENST00000598558 DEFB1P60022 68 aa10.49□□□□□ -0.73
SHKBP1-217ENST00000598558 OR8I2Q8N0Y5 310 aa10.49□□□□□ -0.73
SHKBP1-217ENST00000598558 TRAV5A0A0B4J249 113 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 KNCNA6PVL3 124 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 MRPS12O15235 138 aaKnown RBP10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 PET100P0DJ07 73 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 RPL35AP18077 110 aaKnown RBP10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 RAP2BP61225 183 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 GCSAMLQ5JQS6 135 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 RSG1Q9BU20 258 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 NPCDR1Q9BY65 106 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 WDR61Q9GZS3 305 aaKnown RBP10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 SLC39A9Q9NUM3 307 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 PFDN2Q9UHV9 154 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 PXMP4Q9Y6I8 212 aa10.48□□□□□ -0.73
SHKBP1-217ENST00000598558 LOC102724200A0A096LPH7 203 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms