RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 C16orf54Q6UWD8 224 aa11.78□□□□□ -0.52
USHBP1-206ENST00000596436 GLMPQ8WWB7 406 aa11.78□□□□□ -0.52
USHBP1-206ENST00000596436 TMEM231Q9H6L2 316 aa11.78□□□□□ -0.52
USHBP1-206ENST00000596436 OR5AC2Q9NZP5 309 aa11.78□□□□□ -0.52
USHBP1-206ENST00000596436 RABAC1Q9UI14 185 aa11.78□□□□□ -0.52
USHBP1-206ENST00000596436 A0A1W2PS18 150 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 FNDC10F2Z333 226 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 H0YIZ8 118 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 BUB3O43684 328 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 FABP1P07148 127 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 PVALBP20472 110 aaPredicted RBP11.77□□□□□ -0.53
USHBP1-206ENST00000596436 EIF2B2P49770 351 aaKnown RBP11.77□□□□□ -0.53
USHBP1-206ENST00000596436 SLC38A11Q08AI6 406 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 LRRC37A5PQ49AS3 106 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 TMEM252Q8N6L7 170 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 NARS2Q96I59 477 aaKnown RBP11.77□□□□□ -0.53
USHBP1-206ENST00000596436 MS4A6AQ9H2W1 248 aa11.77□□□□□ -0.53
USHBP1-206ENST00000596436 LOC102724200A0A096LPH7 203 aaPredicted RBP11.76□□□□□ -0.53
USHBP1-206ENST00000596436 ATF4P18848 351 aaPredicted RBP11.76□□□□□ -0.53
USHBP1-206ENST00000596436 EWSR1Q01844 656 aaKnown RBP eCLIP11.76□□□□□ -0.53
USHBP1-206ENST00000596436 CYP2G1PQ6ZSU1 146 aa11.76□□□□□ -0.53
USHBP1-206ENST00000596436 FAM24BQ8N5W8 94 aa11.76□□□□□ -0.53
USHBP1-206ENST00000596436 TP53TG1Q9Y2A0 90 aa11.76□□□□□ -0.53
USHBP1-206ENST00000596436 NUPR2A6NF83 97 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 CD5P06127 495 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 CXCL3P19876 107 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 SULT1A1P50225 295 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 RPL11P62913 178 aaKnown RBP11.75□□□□□ -0.53
USHBP1-206ENST00000596436 ZNF124Q15973 351 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 RGS21Q2M5E4 152 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 TMEM217Q8N7C4 229 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 PPP1R1CQ8WVI7 109 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 GRAMD2BQ96HH9 432 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 GGACTQ9BVM4 153 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 MAP6D1Q9H9H5 199 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 NPVFQ9HCQ7 196 aa11.75□□□□□ -0.53
USHBP1-206ENST00000596436 VPS13DQ5THJ4 4388 aa11.74□□□□□ -0.53
USHBP1-206ENST00000596436 LY6G6CO95867 125 aa11.74□□□□□ -0.53
USHBP1-206ENST00000596436 CYCSP99999 105 aaKnown RBP11.74□□□□□ -0.53
USHBP1-206ENST00000596436 Q6ZWC4 215 aa11.74□□□□□ -0.53
USHBP1-206ENST00000596436 BPIFCQ8NFQ6 507 aa11.74□□□□□ -0.53
USHBP1-206ENST00000596436 STXBP6Q8NFX7 210 aa11.74□□□□□ -0.53
USHBP1-206ENST00000596436 TRAV2A0A0B4J234 112 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 K7EQG2 157 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 CFDP00746 253 aaPredicted RBP11.73□□□□□ -0.53
USHBP1-206ENST00000596436 PAFAH1B2P68402 229 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 OXA1LQ15070 435 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 FCN2Q15485 313 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 VWC2Q2TAL6 325 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 CEMP1Q6PRD7 247 aaPredicted RBP11.73□□□□□ -0.53
USHBP1-206ENST00000596436 TEPPQ6URK8 271 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 APRG1Q8IVJ8 170 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 OR11H7Q8NGC8 314 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 DCANP1Q8TF63 244 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 MGST2Q99735 147 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 RNF126Q9BV68 326 aa11.73□□□□□ -0.53
USHBP1-206ENST00000596436 A0A0J9YWU9 116 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 CXorf65A6NEN9 183 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 HELTA6NFD8 242 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 E5RGE8 158 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 DNASE2O00115 360 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-206ENST00000596436 MPC2O95563 127 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 RLN2P04090 185 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 LINC00869P0C866 280 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 ORM2P19652 201 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 NHLH2Q02577 135 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 SIGLEC15Q6ZMC9 328 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 STX12Q86Y82 276 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 OR1B1Q8NGR6 318 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 TMEM147Q9BVK8 224 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 DOK5Q9P104 306 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 WDR83OSQ9Y284 106 aa11.72□□□□□ -0.53
USHBP1-206ENST00000596436 UBE2L5PA0A1B0GUS4 154 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 AGPAT2O15120 278 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 NUP62P37198 522 aaPredicted RBP11.71□□□□□ -0.53
USHBP1-206ENST00000596436 PLP1P60201 277 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 SELENOTP62341 195 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 PMS2P11Q13670 270 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 UQCC1Q9NVA1 299 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 SLC45A2Q9UMX9 530 aa11.71□□□□□ -0.53
USHBP1-206ENST00000596436 UBE2CO00762 179 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 SPRY2O43597 315 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 ZNF688P0C7X2 276 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 S100A11P31949 105 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 DEFB131AP59861 70 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 HBG1P69891 147 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 HBG2P69892 147 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 C1orf194Q5T5A4 169 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 ZNF546Q86UE3 836 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 PPP1R14BQ96C90 147 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 SCRT1Q9BWW7 348 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 MED28Q9H204 178 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 SLC25A32Q9H2D1 315 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 MBD2Q9UBB5 411 aa11.7□□□□□ -0.54
USHBP1-206ENST00000596436 PCLOQ9Y6V0 5065 aa11.69□□□□□ -0.54
USHBP1-206ENST00000596436 KIR2DL5BA0A0G2JN68 375 aa11.69□□□□□ -0.54
USHBP1-206ENST00000596436 KIR2DL5BA0A0G2JPC4 375 aa11.69□□□□□ -0.54
USHBP1-206ENST00000596436 ZNF98A6NK75 572 aa11.69□□□□□ -0.54
USHBP1-206ENST00000596436 H3BRN7 92 aa11.69□□□□□ -0.54
USHBP1-206ENST00000596436 AP2S1P53680 142 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms