RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZFAND6Q6FIF0 208 aa11.91□□□□□ -0.5
TRIM28-206ENST00000595974 GATAD1Q8WUU5 269 aa11.91□□□□□ -0.5
TRIM28-206ENST00000595974 C2orf50Q96LR7 162 aa11.91□□□□□ -0.5
TRIM28-206ENST00000595974 MGAT4CQ9UBM8 478 aa11.91□□□□□ -0.5
TRIM28-206ENST00000595974 K7EPK0 472 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 L7N2F9 121 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 CA1P00915 261 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-206ENST00000595974 SELENOTP62341 195 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 VAMP2P63027 116 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 IFITM3Q01628 133 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 PSMG4Q5JS54 123 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 GSG1LQ6UXU4 331 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 CYP2G1PQ6ZSU1 146 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 TRPT1Q86TN4 253 aaKnown RBP11.9□□□□□ -0.5
TRIM28-206ENST00000595974 GPN1Q9HCN4 374 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-206ENST00000595974 NPVFQ9HCQ7 196 aa11.9□□□□□ -0.5
TRIM28-206ENST00000595974 LSM5Q9Y4Y9 91 aaKnown RBP11.9□□□□□ -0.5
TRIM28-206ENST00000595974 SPP1P10451 314 aa11.89□□□□□ -0.51
TRIM28-206ENST00000595974 RRAS2P62070 204 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-206ENST00000595974 TMEM41BQ5BJD5 291 aa11.89□□□□□ -0.51
TRIM28-206ENST00000595974 OR8I2Q8N0Y5 310 aa11.89□□□□□ -0.51
TRIM28-206ENST00000595974 TMEM147Q9BVK8 224 aa11.89□□□□□ -0.51
TRIM28-206ENST00000595974 GGACTQ9BVM4 153 aa11.89□□□□□ -0.51
TRIM28-206ENST00000595974 KNCNA6PVL3 124 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 PRAF2O60831 178 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 ORM2P19652 201 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 PVALBP20472 110 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-206ENST00000595974 GATA2P23769 480 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-206ENST00000595974 DEFA1P59665 94 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 DEFA3P59666 94 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 ACTL10Q5JWF8 245 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 SAMD13Q5VXD3 122 aa11.88□□□□□ -0.51
TRIM28-206ENST00000595974 MORN3Q6PF18 240 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-206ENST00000595974 TMEM182Q6ZP80 229 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-206ENST00000595974 A0A0J9YWU9 116 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 ZNF98A6NK75 572 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 LINC00869P0C866 280 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 ATF4P18848 351 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-206ENST00000595974 GALR1P47211 349 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 PSMB3P49720 205 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 MEOX2P50222 304 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 CAV2P51636 162 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 IL15RAQ13261 267 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 TEPPQ6URK8 271 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 NRARPQ7Z6K4 114 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 OR1B1Q8NGR6 318 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 GPR82Q96P67 336 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 C11orf1Q9H5F2 150 aa11.87□□□□□ -0.51
TRIM28-206ENST00000595974 TENM2Q9NT68 2774 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 RYR3Q15413 4870 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 SOCS3O14543 225 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 DEDDO75618 318 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 ID1P41134 155 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 BCAP31P51572 246 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 PLP1P60201 277 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 S100A10P60903 97 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 RAP2BP61225 183 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 ARL16Q0P5N6 197 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 S100A7AQ86SG5 101 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 TMEM217Q8N7C4 229 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 RARRES2Q99969 163 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 SLC25A32Q9H2D1 315 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 SLC25A22Q9H936 323 aa11.86□□□□□ -0.51
TRIM28-206ENST00000595974 DYNC2H1Q8NCM8 4307 aaKnown RBP11.86□□□□□ -0.51
TRIM28-206ENST00000595974 INMT-MINDY4F8WBC2 141 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 H3BRN7 92 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 ISLRO14498 428 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 SLC38A11Q08AI6 406 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 RAB32Q13637 225 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 ZNF546Q86UE3 836 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 MARVELD1Q9BSK0 173 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 LYRM2Q9NU23 88 aaPredicted RBP11.85□□□□□ -0.51
TRIM28-206ENST00000595974 DOK5Q9P104 306 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 HIGD1AQ9Y241 93 aa11.85□□□□□ -0.51
TRIM28-206ENST00000595974 HYPMO75409 117 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 GIG44P09565 113 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-206ENST00000595974 HLA-DRB4P13762 266 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 C4BPBP20851 252 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 NUTF2P61970 127 aaKnown RBP11.84□□□□□ -0.51
TRIM28-206ENST00000595974 PXDC1Q5TGL8 231 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 OR11H2Q8NH07 326 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 SHANK2-AS3Q9BTD1 123 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 SCRT1Q9BWW7 348 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 SLC25A39Q9BZJ4 359 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-206ENST00000595974 C11orf68Q9H3H3 251 aaKnown RBP11.84□□□□□ -0.51
TRIM28-206ENST00000595974 HLA-DRB4X5D2U9 266 aa11.84□□□□□ -0.51
TRIM28-206ENST00000595974 FAM24AA6NFZ4 105 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 H3BMM0 161 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 GOSR2O14653 212 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 CST7O76096 145 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 OR5G3P0C626 314 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 FOXI2Q6ZQN5 318 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 STX12Q86Y82 276 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 RNF24Q9Y225 148 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 LYSTQ99698 3801 aa11.83□□□□□ -0.52
TRIM28-206ENST00000595974 AGPAT2O15120 278 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 RPL7P18124 248 aaKnown RBP11.82□□□□□ -0.52
TRIM28-206ENST00000595974 SULT1A1P50225 295 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 HBG1P69891 147 aa11.82□□□□□ -0.52
TRIM28-206ENST00000595974 HBG2P69892 147 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 224.5 ms