RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ID1P41134 155 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 EMP1P54849 157 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 PSG9Q00887 426 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 AMTNQ6UX39 209 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 GSG1LQ6UXU4 331 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 THAP8Q8NA92 274 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 C20orf173Q96LM9 149 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 LINC00052Q96N35 136 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 TRGV9Q99603 122 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 SOSTQ9BQB4 213 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 PBDC1Q9BVG4 233 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 KRTAP4-5Q9BYR2 181 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 RABL2AQ9UBK7 228 aaPredicted RBP8.31□□□□□ -1.08
CLIP3-204ENST00000590559 RABL2BQ9UNT1 228 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 KCNIP3Q9Y2W7 256 aa8.31□□□□□ -1.08
CLIP3-204ENST00000590559 ZFP92A6NM28 416 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 F6UB75 175 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 RGS5O15539 181 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 IFNA21P01568 189 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 ALDH3B2P48448 385 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 FAM78BQ5VT40 261 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 CLVS1Q8IUQ0 354 aaPredicted RBP8.3□□□□□ -1.08
CLIP3-204ENST00000590559 PFDN2Q9UHV9 154 aa8.3□□□□□ -1.08
CLIP3-204ENST00000590559 IGLV2-18A0A075B6J9 118 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 IGHV3OR16-12A0A075B7B8 117 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 SNRPGP15A8MWD9 76 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 LYZP61626 148 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 IL18Q14116 193 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 OR4B1Q8NGF8 309 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 DYNC2LI1Q8TCX1 351 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 DIRAS2Q96HU8 199 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 SLC35E1Q96K37 410 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 SCGB3A2Q96PL1 93 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 SCP2D1Q9UJQ7 156 aa8.29□□□□□ -1.08
CLIP3-204ENST00000590559 YTHDF2Q9Y5A9 579 aaKnown RBP8.29□□□□□ -1.08
CLIP3-204ENST00000590559 LOC102723971A0A1B0GUV8 181 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 DUXBA0A1W2PPF3 345 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 CRXO43186 299 aaPredicted RBP8.28□□□□□ -1.08
CLIP3-204ENST00000590559 HBE1P02100 147 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 SRPXP78539 464 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 SAMD13Q5VXD3 122 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 LRTM2Q8N967 370 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 COQ8AQ8NI60 647 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 IGF2BP2-AS1Q96M15 143 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 SLC25A32Q9H2D1 315 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 RPRMQ9NS64 109 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 SLC45A2Q9UMX9 530 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 GOLT1BQ9Y3E0 138 aa8.28□□□□□ -1.08
CLIP3-204ENST00000590559 ZNF98A6NK75 572 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 CFDP00746 253 aaPredicted RBP8.27□□□□□ -1.09
CLIP3-204ENST00000590559 FABP1P07148 127 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 SLC25A6P12236 298 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 AKR1C4P17516 323 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 MEOX2P50222 304 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 FAM3BP58499 235 aaPredicted RBP8.27□□□□□ -1.09
CLIP3-204ENST00000590559 OR2F1Q13607 317 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 RRN3P1Q2M238 152 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 EBLN2Q6P2I7 272 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 TMEM88Q6PEY1 159 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 TMEM182Q6ZP80 229 aaPredicted RBP8.27□□□□□ -1.09
CLIP3-204ENST00000590559 ZNF575Q86XF7 245 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 UBE2DNLQ8IWF7 75 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 OR8I2Q8N0Y5 310 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 OR4D5Q8NGN0 318 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 CCDC59Q9P031 241 aaKnown RBP8.27□□□□□ -1.09
CLIP3-204ENST00000590559 DOK5Q9P104 306 aa8.27□□□□□ -1.09
CLIP3-204ENST00000590559 TRAV8-2A0A0B4J237 113 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 PLAC8L1A1L4L8 177 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 PRM2P04554 102 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 TSPOP30536 169 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 TMEM128Q5BJH2 165 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 C1orf134Q5TEV5 83 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 C15orf53Q8NAA6 179 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 OR11H7Q8NGC8 314 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 OR1S1Q8NH92 325 aa8.26□□□□□ -1.09
CLIP3-204ENST00000590559 SLIRPQ9GZT3 109 aaKnown RBP8.26□□□□□ -1.09
CLIP3-204ENST00000590559 RSL24D1Q9UHA3 163 aaKnown RBP8.26□□□□□ -1.09
CLIP3-204ENST00000590559 IAPPP10997 89 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 ANXA3P12429 323 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 HTN3P15516 51 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 GALR1P47211 349 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 DAD1P61803 113 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 RAB11AP62491 216 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 GGNBP1Q5YKI7 109 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 GPR141Q7Z602 305 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 TRIM63Q969Q1 353 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 C16orf92Q96LL3 132 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 BCL7BQ9BQE9 202 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 C7orf50Q9BRJ6 194 aaKnown RBP8.25□□□□□ -1.09
CLIP3-204ENST00000590559 RSG1Q9BU20 258 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 MRPS26Q9BYN8 205 aaKnown RBP8.25□□□□□ -1.09
CLIP3-204ENST00000590559 MAGT1Q9H0U3 335 aa8.25□□□□□ -1.09
CLIP3-204ENST00000590559 PIGBOS1A0A0B4J2F0 54 aa8.24□□□□□ -1.09
CLIP3-204ENST00000590559 LYRM9A8MSI8 78 aa8.24□□□□□ -1.09
CLIP3-204ENST00000590559 GATA2P23769 480 aaPredicted RBP8.24□□□□□ -1.09
CLIP3-204ENST00000590559 TNFSF8P32971 234 aa8.24□□□□□ -1.09
CLIP3-204ENST00000590559 CNN1P51911 297 aaKnown RBP8.24□□□□□ -1.09
CLIP3-204ENST00000590559 SOHLH1Q5JUK2 328 aa8.24□□□□□ -1.09
CLIP3-204ENST00000590559 OR1B1Q8NGR6 318 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms