RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KLHL30-AS1Q8NEE0 82 aa19.25■□□□□ 0.67
SHMT1-207ENST00000580002 A0A1W2PPV4 95 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 GGCTO75223 188 aaKnown RBP19.24■□□□□ 0.67
SHMT1-207ENST00000580002 GATAD1Q8WUU5 269 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 MBD3L1Q8WWY6 194 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 C20orf24Q9BUV8 137 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 FUT9Q9Y231 359 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 EDN2P20800 178 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 BLOC1S1P78537 153 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 DPPA3Q6W0C5 159 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 SCRT1Q9BWW7 348 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 HIGD1AQ9Y241 93 aa19.24■□□□□ 0.67
SHMT1-207ENST00000580002 IGHV3OR16-13A0A075B7E8 117 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 IGHV3-49A0A0A0MS15 119 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 IGHV3-74A0A0B4J1X5 117 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 CTXND1A0A1B0GTU2 59 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 MAP1LC3B2A6NCE7 125 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 APOHP02749 345 aaPredicted RBP19.23■□□□□ 0.67
SHMT1-207ENST00000580002 SNRPCP09234 159 aaKnown RBP19.23■□□□□ 0.67
SHMT1-207ENST00000580002 RHOBP62745 196 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 OR1L4Q8NGR5 311 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 C4orf3Q8WVX3 66 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 ZNF503Q96F45 646 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 SLC25A39Q9BZJ4 359 aaPredicted RBP19.23■□□□□ 0.67
SHMT1-207ENST00000580002 MAP1LC3BQ9GZQ8 125 aa19.23■□□□□ 0.67
SHMT1-207ENST00000580002 RELQ04864 619 aaPredicted RBP19.22■□□□□ 0.67
SHMT1-207ENST00000580002 LRRC20Q8TCA0 184 aa19.22■□□□□ 0.67
SHMT1-207ENST00000580002 FAM167A-AS1Q96KT0 104 aa19.22■□□□□ 0.67
SHMT1-207ENST00000580002 SLC25A2Q9BXI2 301 aa19.22■□□□□ 0.67
SHMT1-207ENST00000580002 ZNF320A2RRD8 509 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 ADARB2-AS1A8MUL3 147 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 NUDT19A8MXV4 375 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 SCGB2A1O75556 95 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 SLC7A5P1Q8MH63 180 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 OR11H1Q8NG94 326 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 LYPD6BQ8NI32 183 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 PFDN5Q99471 154 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 ELOA3CA0A087WX78 387 aaPredicted RBP19.21■□□□□ 0.67
SHMT1-207ENST00000580002 IGHV3-66A0A0C4DH42 116 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 HSPB1P04792 205 aaKnown RBP19.21■□□□□ 0.67
SHMT1-207ENST00000580002 SLURP1P55000 103 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 FAM209BQ5JX69 171 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 SELENOKQ9Y6D0 94 aa19.21■□□□□ 0.67
SHMT1-207ENST00000580002 NDUFA4O00483 81 aa19.2■□□□□ 0.66
SHMT1-207ENST00000580002 STAG3L2P0CL84 134 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 STAG3L3P0CL85 134 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 ARL14EPLP0DKL9 152 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 HOXD3P31249 432 aaPredicted RBP19.19■□□□□ 0.66
SHMT1-207ENST00000580002 RPEL1Q2QD12 228 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 TM4SF20Q53R12 229 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 AWAT1Q58HT5 328 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 RAX2Q96IS3 184 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 TSSC4Q9Y5U2 329 aaPredicted RBP19.19■□□□□ 0.66
SHMT1-207ENST00000580002 H3BRN7 92 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 PYYP10082 97 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 NSUN5P1Q3KNT7 163 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 OR1N2Q8NGR9 330 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 WFDC12Q8WWY7 111 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 C19orf24Q9BVV8 132 aa19.19■□□□□ 0.66
SHMT1-207ENST00000580002 FOXL1Q12952 345 aa19.18■□□□□ 0.66
SHMT1-207ENST00000580002 SHANK2-AS3Q9BTD1 123 aa19.18■□□□□ 0.66
SHMT1-207ENST00000580002 RABAC1Q9UI14 185 aa19.18■□□□□ 0.66
SHMT1-207ENST00000580002 OR10J4P0C629 311 aa19.17■□□□□ 0.66
SHMT1-207ENST00000580002 C8orf88P0DMB2 117 aa19.17■□□□□ 0.66
SHMT1-207ENST00000580002 SYNJ2BPP57105 145 aa19.17■□□□□ 0.66
SHMT1-207ENST00000580002 GPHB5Q86YW7 130 aa19.17■□□□□ 0.66
SHMT1-207ENST00000580002 IQCF2Q8IXL9 164 aa19.17■□□□□ 0.66
SHMT1-207ENST00000580002 TMEM190Q8WZ59 177 aa19.17■□□□□ 0.66
SHMT1-207ENST00000580002 ZNF98A6NK75 572 aa19.16■□□□□ 0.66
SHMT1-207ENST00000580002 MRPL32Q9BYC8 188 aaKnown RBP19.16■□□□□ 0.66
SHMT1-207ENST00000580002 TECRQ9NZ01 308 aaKnown RBP19.16■□□□□ 0.66
SHMT1-207ENST00000580002 TRAV1-1A0A0B4J248 108 aa19.16■□□□□ 0.66
SHMT1-207ENST00000580002 A0A1B0GUS0 222 aa19.16■□□□□ 0.66
SHMT1-207ENST00000580002 LINC01619G3V211 115 aa19.16■□□□□ 0.66
SHMT1-207ENST00000580002 SRSF3P84103 164 aaKnown RBP19.16■□□□□ 0.66
SHMT1-207ENST00000580002 LINC00862A6NCI5 91 aa19.15■□□□□ 0.66
SHMT1-207ENST00000580002 OR7C2O60412 319 aa19.15■□□□□ 0.66
SHMT1-207ENST00000580002 RNF2Q99496 336 aa19.15■□□□□ 0.66
SHMT1-207ENST00000580002 H3BTX0 84 aa19.14■□□□□ 0.66
SHMT1-207ENST00000580002 KLF5Q13887 457 aaPredicted RBP19.14■□□□□ 0.66
SHMT1-207ENST00000580002 WNK1Q9H4A3 2382 aa19.14■□□□□ 0.65
SHMT1-207ENST00000580002 CRYBB3P26998 211 aa19.14■□□□□ 0.65
SHMT1-207ENST00000580002 GCHFRP30047 84 aa19.14■□□□□ 0.65
SHMT1-207ENST00000580002 FAM106AQ4KMX7 169 aa19.14■□□□□ 0.65
SHMT1-207ENST00000580002 IL34Q6ZMJ4 242 aa19.14■□□□□ 0.65
SHMT1-207ENST00000580002 DPF1Q92782 380 aa19.14■□□□□ 0.65
SHMT1-207ENST00000580002 NPPCP23582 126 aa19.13■□□□□ 0.65
SHMT1-207ENST00000580002 COMMD7Q86VX2 200 aa19.13■□□□□ 0.65
SHMT1-207ENST00000580002 DLX4Q92988 240 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-207ENST00000580002 METTL26Q96S19 204 aa19.13■□□□□ 0.65
SHMT1-207ENST00000580002 RARRES2Q99969 163 aa19.13■□□□□ 0.65
SHMT1-207ENST00000580002 GNG13Q9P2W3 67 aa19.13■□□□□ 0.65
SHMT1-207ENST00000580002 U3KQE9 123 aa19.13■□□□□ 0.65
SHMT1-207ENST00000580002 CCL24O00175 119 aa19.12■□□□□ 0.65
SHMT1-207ENST00000580002 BUB3O43684 328 aa19.12■□□□□ 0.65
SHMT1-207ENST00000580002 CXorf1O96002 111 aa19.12■□□□□ 0.65
SHMT1-207ENST00000580002 HAGHQ16775 308 aa19.12■□□□□ 0.65
SHMT1-207ENST00000580002 OR51M1Q9H341 326 aa19.12■□□□□ 0.65
SHMT1-207ENST00000580002 MRPS12O15235 138 aaKnown RBP19.11■□□□□ 0.65
SHMT1-207ENST00000580002 HBE1P02100 147 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms