RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CEACAM3P40198 252 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 HLA-DRB5Q30154 266 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 MIC13Q5XKP0 118 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 WDR25Q64LD2 544 aaPredicted RBP4.68□□□□□ -1.66
VPS39-209ENST00000568029 ETFRF1Q6IPR1 90 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 SSX7Q7RTT5 188 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 TMEM144Q7Z5S9 345 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 MOB3BQ86TA1 216 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 MMD2Q8IY49 270 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 LY6G5BQ8NDX9 201 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 OR4F5Q8NH21 305 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 RNASEH2CQ8TDP1 164 aaKnown RBP4.68□□□□□ -1.66
VPS39-209ENST00000568029 HIST1H2BAQ96A08 127 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 OR4F4Q96R69 305 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 RNF2Q99496 336 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 SMIM7Q9BQ49 75 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 GGTLC1Q9BX51 225 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 SDF2L1Q9HCN8 221 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 TMEM242Q9NWH2 141 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 ZNRD1Q9P1U0 126 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 ONECUT1Q9UBC0 465 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 NAT8Q9UHE5 227 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 LOC105371242A0A075B767 164 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 C11orf94C9JXX5 98 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 CLDN34H7C241 214 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 VCYO14598 125 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 HMGB3O15347 200 aaKnown RBP4.67□□□□□ -1.66
VPS39-209ENST00000568029 TGOLN2O43493 480 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 YIF1AO95070 293 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 VENTXO95231 258 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 GOSR1O95249 250 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 IGLV1-47P01700 117 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 OPN1MWP04001 364 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 OPN1MW2P0DN77 364 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 OPN1MW3P0DN78 364 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 IGHV4-31P0DP07 118 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 RNASE2P10153 161 aaKnown RBP4.67□□□□□ -1.66
VPS39-209ENST00000568029 CTRB1P17538 263 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 RAB5AP20339 215 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 CAMPP49913 170 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 TAS2R45P59539 299 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 CD81P60033 236 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 SEC61BP60468 96 aaKnown RBP4.67□□□□□ -1.66
VPS39-209ENST00000568029 B2MP61769 119 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 BSXQ3C1V8 233 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 FAM120AOSQ5T036 256 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 CST9LP1Q5W188 147 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 CTRB2Q6GPI1 263 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 C11orf71Q6IPW1 123 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 PNKDQ8N490 385 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 C11orf42Q8N5U0 333 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 FAM24BQ8N5W8 94 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 SSMEM1Q8WWF3 244 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 RPEQ96AT9 228 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 MALSU1Q96EH3 234 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 UHRF2Q96PU4 802 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 ZNF430Q9H8G1 570 aaPredicted RBP4.67□□□□□ -1.66
VPS39-209ENST00000568029 PATZ1Q9HBE1 687 aaKnown RBP4.67□□□□□ -1.66
VPS39-209ENST00000568029 MALRD1Q5VYJ5 2156 aa4.67□□□□□ -1.66
VPS39-209ENST00000568029 KIAA2026Q5HYC2 2103 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 DYNC2H1Q8NCM8 4307 aaKnown RBP4.66□□□□□ -1.66
VPS39-209ENST00000568029 IGHV1-3A0A0C4DH29 117 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 IGLV2-23P01705 113 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 S100A6P06703 90 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 LINC00869P0C866 280 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 STAG3L2P0CL84 134 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 STAG3L3P0CL85 134 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 IGHV4-30-4P0DP06 118 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 MYOD1P15172 320 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 COX7A1P24310 79 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 S100PP25815 95 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 HTR1DP28221 377 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 OR10J1P30954 320 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 GPR6P46095 362 aaPredicted RBP4.66□□□□□ -1.66
VPS39-209ENST00000568029 RPL27AP46776 148 aaKnown RBP4.66□□□□□ -1.66
VPS39-209ENST00000568029 SELENOTP62341 195 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 GAMTQ14353 236 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 PSG5Q15238 335 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 ADIRFQ15847 76 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 PRSS8Q16651 343 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 ZNF674Q2M3X9 581 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 CYP2G1PQ6ZSU1 146 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 SLC16A13Q7RTY0 426 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 KIR3DL3Q8N743 410 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 Q8N7P7 452 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 OR11H6Q8NGC7 330 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 OR10W1Q8NGF6 305 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 OR4P4Q8NGL7 312 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 OR1L4Q8NGR5 311 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 C22orf15Q8WYQ4 148 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 RPUSD4Q96CM3 377 aaKnown RBP4.66□□□□□ -1.66
VPS39-209ENST00000568029 SRSF8Q9BRL6 282 aaKnown RBP4.66□□□□□ -1.66
VPS39-209ENST00000568029 TMEM167BQ9NRX6 74 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 TECRQ9NZ01 308 aaKnown RBP4.66□□□□□ -1.66
VPS39-209ENST00000568029 DPM3Q9P2X0 92 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 ARL2-SNX15V9GYD0 113 aa4.66□□□□□ -1.66
VPS39-209ENST00000568029 ROS1P08922 2347 aa4.65□□□□□ -1.66
VPS39-209ENST00000568029 IGLV5-52A0A0A0MRZ9 124 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 OOSP1A8MZH6 123 aa4.65□□□□□ -1.67
VPS39-209ENST00000568029 LY6LH3BQJ8 138 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms