RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 LINC00052Q96N35 136 aa10.75□□□□□ -0.69
CLN3-222ENST00000566083 P0DMU3 169 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 FAM231AP0DMU4 169 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 FAM231CP0DMU5 169 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 GALR1P47211 349 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 PRR20EP86478 221 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 PRR20CP86479 221 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 PRR20DP86480 221 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 PRR20BP86481 221 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 PRR20AP86496 221 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 C12orf74Q32Q52 190 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 THAP8Q8NA92 274 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 TRIM63Q969Q1 353 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 FAM210BQ96KR6 192 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 GPR82Q96P67 336 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 NDUFAF3Q9BU61 184 aa10.74□□□□□ -0.69
CLN3-222ENST00000566083 PAIP2BQ9ULR5 123 aaKnown RBP10.74□□□□□ -0.69
CLN3-222ENST00000566083 ZNF705FA8MVS1 300 aaPredicted RBP10.73□□□□□ -0.69
CLN3-222ENST00000566083 SYNGR2O43760 224 aa10.73□□□□□ -0.69
CLN3-222ENST00000566083 ZNF705DP0CH99 300 aaPredicted RBP10.73□□□□□ -0.69
CLN3-222ENST00000566083 ZNF705BP0CI00 300 aaPredicted RBP10.73□□□□□ -0.69
CLN3-222ENST00000566083 PAX9P55771 341 aa10.73□□□□□ -0.69
CLN3-222ENST00000566083 UBE2MP61081 183 aaKnown RBP10.73□□□□□ -0.69
CLN3-222ENST00000566083 OR4D5Q8NGN0 318 aa10.73□□□□□ -0.69
CLN3-222ENST00000566083 RPRMQ9NS64 109 aa10.73□□□□□ -0.69
CLN3-222ENST00000566083 GOLT1BQ9Y3E0 138 aa10.73□□□□□ -0.69
CLN3-222ENST00000566083 RFNGQ9Y644 331 aa10.73□□□□□ -0.69
CLN3-222ENST00000566083 SFT2D2O95562 160 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 PSG9Q00887 426 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 LINC00336Q6ZUF6 198 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 S100A7AQ86SG5 101 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 BPIFCQ8NFQ6 507 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 OR4B1Q8NGF8 309 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 WDR12Q9GZL7 423 aaKnown RBP10.72□□□□□ -0.69
CLN3-222ENST00000566083 NDUFA13Q9P0J0 144 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 HERC2O95714 4834 aa10.72□□□□□ -0.69
CLN3-222ENST00000566083 SOCS3O14543 225 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 IAPPP10997 89 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 OR2F1Q13607 317 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 ZNF79Q15937 498 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 OR1B1Q8NGR6 318 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 C16orf92Q96LL3 132 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 CELA1Q9UNI1 258 aa10.71□□□□□ -0.69
CLN3-222ENST00000566083 IGKV3-20P01619 116 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 SPANXN2Q5MJ10 180 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 GDF5OSQ5U4N7 250 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 POM121L12Q8N7R1 296 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 TMEM147Q9BVK8 224 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 RNF24Q9Y225 148 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 STRAPQ9Y3F4 350 aaKnown RBP10.7□□□□□ -0.7
CLN3-222ENST00000566083 V9GYH0 126 aa10.7□□□□□ -0.7
CLN3-222ENST00000566083 IGKV1OR2-108A0A075B7D4 117 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 A0A0J9YX75 114 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 NAP1L6A6NFF2 107 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 WRBO00258 174 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 HBE1P02100 147 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 INPP1P49441 399 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 AKR1C1Q04828 323 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 PPP1R1AQ13522 171 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 OXA1LQ15070 435 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 ZNF709Q8N972 641 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 C7orf50Q9BRJ6 194 aaKnown RBP10.69□□□□□ -0.7
CLN3-222ENST00000566083 DOK5Q9P104 306 aa10.69□□□□□ -0.7
CLN3-222ENST00000566083 IGHV3OR16-12A0A075B7B8 117 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 CCDC160A6NGH7 325 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 ZNF98A6NK75 572 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 IFNA21P01568 189 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 HOXB5P09067 269 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 SPANXN5Q5MJ07 72 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 FAM78BQ5VT40 261 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 TMEM144Q7Z5S9 345 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 MAGT1Q9H0U3 335 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 SLC25A22Q9H936 323 aa10.68□□□□□ -0.7
CLN3-222ENST00000566083 PRSS46E5RG02 174 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 DUSP14O95147 198 aaKnown RBP10.67□□□□□ -0.7
CLN3-222ENST00000566083 ORM2P19652 201 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 EMP1P54849 157 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 RAP2BP61225 183 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 B2MP61769 119 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 ID3Q02535 119 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 RRN3P1Q2M238 152 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 ZNF767PQ75MW2 155 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 CCDC190Q86UF4 302 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 NIPSNAP3BQ9BS92 247 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 RSG1Q9BU20 258 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 DKK2Q9UBU2 259 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 ZNF701M0R085 212 aaPredicted RBP10.67□□□□□ -0.7
CLN3-222ENST00000566083 RPL7P18124 248 aaKnown RBP10.67□□□□□ -0.7
CLN3-222ENST00000566083 FXYD7P58549 80 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 SELENOTP62341 195 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 TMEM208Q9BTX3 173 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 SLC25A32Q9H2D1 315 aa10.67□□□□□ -0.7
CLN3-222ENST00000566083 A8MTW9 85 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 IL5P05113 134 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 CNPY1Q3B7I2 92 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 FAM222AQ5U5X8 452 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 TRIQKQ629K1 86 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 ACOT7LQ6ZUV0 252 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 IGF2BP2-AS1Q96M15 143 aa10.66□□□□□ -0.7
CLN3-222ENST00000566083 SLC35B3Q9H1N7 401 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms