RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 IGKV3-20P01619 116 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 SPART-AS1P0CW21 52 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 P0DMU3 169 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 FAM231AP0DMU4 169 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 FAM231CP0DMU5 169 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 VAMP1P23763 118 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 GDF5OSQ5U4N7 250 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 ZNF767PQ75MW2 155 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 OR8I2Q8N0Y5 310 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 THAP8Q8NA92 274 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 DEDD2Q8WXF8 326 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 TRIM63Q969Q1 353 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 SLC25A21Q9BQT8 299 aaPredicted RBP13.44□□□□□ -0.26
CLN3-218ENST00000565688 TMED3Q9Y3Q3 217 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 TEX48A0A1B0GUV7 120 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 IAPPP10997 89 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 MEOX2P50222 304 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 OR2F1Q13607 317 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 PYDC2Q56P42 97 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 GGNBP1Q5YKI7 109 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 EBLN2Q6P2I7 272 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 PAIP2BQ9ULR5 123 aaKnown RBP13.43□□□□□ -0.26
CLN3-218ENST00000565688 SLC45A2Q9UMX9 530 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 RFNGQ9Y644 331 aa13.43□□□□□ -0.26
CLN3-218ENST00000565688 PAX9P55771 341 aa13.42□□□□□ -0.26
CLN3-218ENST00000565688 ZNF79Q15937 498 aa13.42□□□□□ -0.26
CLN3-218ENST00000565688 LINC00336Q6ZUF6 198 aa13.42□□□□□ -0.26
CLN3-218ENST00000565688 ZNF709Q8N972 641 aa13.42□□□□□ -0.26
CLN3-218ENST00000565688 OR4B1Q8NGF8 309 aa13.42□□□□□ -0.26
CLN3-218ENST00000565688 IGHV3OR16-12A0A075B7B8 117 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 IGKV1OR2-108A0A075B7D4 117 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 SYNGR2O43760 224 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 S100A7P31151 101 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 GALR1P47211 349 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 FXYD7P58549 80 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 DEFB1P60022 68 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 PSG9Q00887 426 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 POM121L12Q8N7R1 296 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 RPRMQ9NS64 109 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 GOLT1BQ9Y3E0 138 aa13.41□□□□□ -0.26
CLN3-218ENST00000565688 HERC2O95714 4834 aa13.4□□□□□ -0.26
CLN3-218ENST00000565688 SFT2D2O95562 160 aa13.4□□□□□ -0.26
CLN3-218ENST00000565688 EMP1P54849 157 aa13.4□□□□□ -0.26
CLN3-218ENST00000565688 FAM210BQ96KR6 192 aa13.4□□□□□ -0.26
CLN3-218ENST00000565688 A0A0J9YX75 114 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 S100A5P33763 92 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 PPP1R1AQ13522 171 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 FAM78BQ5VT40 261 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 BPIFCQ8NFQ6 507 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 OR4D5Q8NGN0 318 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 C16orf92Q96LL3 132 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 GPR82Q96P67 336 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 MAGT1Q9H0U3 335 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 SLC35B3Q9H1N7 401 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 V9GYH0 126 aa13.39□□□□□ -0.27
CLN3-218ENST00000565688 ZNF98A6NK75 572 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 PRSS46E5RG02 174 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 WRBO00258 174 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 HBE1P02100 147 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 OR1B1Q8NGR6 318 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 C7orf50Q9BRJ6 194 aaKnown RBP13.38□□□□□ -0.27
CLN3-218ENST00000565688 NIPSNAP3BQ9BS92 247 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 SLC25A22Q9H936 323 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 DKK2Q9UBU2 259 aa13.38□□□□□ -0.27
CLN3-218ENST00000565688 F6UB75 175 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 HOXB5P09067 269 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 UBE2MP61081 183 aaKnown RBP13.37□□□□□ -0.27
CLN3-218ENST00000565688 RSG1Q9BU20 258 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 TMEM147Q9BVK8 224 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 SCRT1Q9BWW7 348 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 SLC25A32Q9H2D1 315 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 DOK5Q9P104 306 aa13.37□□□□□ -0.27
CLN3-218ENST00000565688 STRAPQ9Y3F4 350 aaKnown RBP13.37□□□□□ -0.27
CLN3-218ENST00000565688 ORM2P19652 201 aa13.36□□□□□ -0.27
CLN3-218ENST00000565688 AKR1C1Q04828 323 aa13.36□□□□□ -0.27
CLN3-218ENST00000565688 OXA1LQ15070 435 aa13.36□□□□□ -0.27
CLN3-218ENST00000565688 SPANXN5Q5MJ07 72 aa13.36□□□□□ -0.27
CLN3-218ENST00000565688 FAM222AQ5U5X8 452 aa13.36□□□□□ -0.27
CLN3-218ENST00000565688 LOC102723971A0A1B0GUV8 181 aa13.35□□□□□ -0.27
CLN3-218ENST00000565688 A8MTW9 85 aa13.35□□□□□ -0.27
CLN3-218ENST00000565688 IFNA21P01568 189 aa13.35□□□□□ -0.27
CLN3-218ENST00000565688 RRN3P1Q2M238 152 aa13.35□□□□□ -0.27
CLN3-218ENST00000565688 C1orf158Q8N1D5 194 aa13.35□□□□□ -0.27
CLN3-218ENST00000565688 C20orf173Q96LM9 149 aa13.35□□□□□ -0.27
CLN3-218ENST00000565688 ACOT7LQ6ZUV0 252 aa13.34□□□□□ -0.27
CLN3-218ENST00000565688 TMEM144Q7Z5S9 345 aa13.34□□□□□ -0.27
CLN3-218ENST00000565688 CCDC190Q86UF4 302 aa13.34□□□□□ -0.27
CLN3-218ENST00000565688 IGF2BP2-AS1Q96M15 143 aa13.34□□□□□ -0.27
CLN3-218ENST00000565688 TMEM208Q9BTX3 173 aa13.34□□□□□ -0.27
CLN3-218ENST00000565688 YTHDF2Q9Y5A9 579 aaKnown RBP13.34□□□□□ -0.27
CLN3-218ENST00000565688 CCDC160A6NGH7 325 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 H3BP45 60 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 DUSP14O95147 198 aaKnown RBP13.33□□□□□ -0.28
CLN3-218ENST00000565688 GATA2P23769 480 aaPredicted RBP13.33□□□□□ -0.28
CLN3-218ENST00000565688 ID3Q02535 119 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 SPANXN2Q5MJ10 180 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 AMTNQ6UX39 209 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 GSG1LQ6UXU4 331 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.33□□□□□ -0.28
CLN3-218ENST00000565688 C17orf77Q96MU5 243 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms