RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 C10orf113Q5VZT2 155 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 C1QL4Q86Z23 238 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 GATAD1Q8WUU5 269 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 DUX3Q96PT4 197 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 METTL26Q96S19 204 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 RNF2Q99496 336 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 DOK5Q9P104 306 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 RABAC1Q9UI14 185 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 HIGD1AQ9Y241 93 aa12.97□□□□□ -0.33
CMTM3-208ENST00000564247 NPPCP23582 126 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 RAB5CP51148 216 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 SLURP1P55000 103 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 KLF5Q13887 457 aaPredicted RBP12.96□□□□□ -0.33
CMTM3-208ENST00000564247 TMEM41BQ5BJD5 291 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 TEX261Q6UWH6 196 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 OR10G4Q8NGN3 311 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 OR10G9Q8NGN4 311 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 OR10G7Q8NGN6 311 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 TMEM190Q8WZ59 177 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 NARS2Q96I59 477 aaKnown RBP12.96□□□□□ -0.33
CMTM3-208ENST00000564247 ZFAND3Q9H8U3 227 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 RNF24Q9Y225 148 aa12.96□□□□□ -0.33
CMTM3-208ENST00000564247 NOTCH3Q9UM47 2321 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 A0A1W2PPV4 95 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 K7EMT4 169 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 LGALS9O00182 355 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 PF4P02776 101 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 SYNJ2BPP57105 145 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 RHOBP62745 196 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 FHL3Q13643 280 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 SAMD5Q5TGI4 173 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 ALKAL2Q6UX46 152 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 REC114Q7Z4M0 266 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 RCC1LQ96I51 464 aaKnown RBP12.95□□□□□ -0.34
CMTM3-208ENST00000564247 ACTR3CQ9C0K3 210 aaPredicted RBP12.95□□□□□ -0.34
CMTM3-208ENST00000564247 MRPL27Q9P0M9 148 aaKnown RBP12.95□□□□□ -0.34
CMTM3-208ENST00000564247 PEMTQ9UBM1 199 aa12.95□□□□□ -0.34
CMTM3-208ENST00000564247 PRKDCP78527 4128 aaKnown RBP12.94□□□□□ -0.34
CMTM3-208ENST00000564247 IGHV3OR16-8A0A075B7F1 116 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 RAB2AP61019 212 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 USF2Q15853 346 aaPredicted RBP12.94□□□□□ -0.34
CMTM3-208ENST00000564247 GCSAMLQ5JQS6 135 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 FAM78BQ5VT40 261 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 UNQ9165/PRO28630Q6UXU0 137 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 DPPA3Q6W0C5 159 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 ZNF680Q8NEM1 530 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 RNF141Q8WVD5 230 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 TMEM37Q8WXS4 190 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 VSIRQ9H7M9 311 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 RPRMQ9NS64 109 aa12.94□□□□□ -0.34
CMTM3-208ENST00000564247 A0A1W2PS18 150 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 G3V4G9 280 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 ZNF207O43670 478 aaKnown RBP12.93□□□□□ -0.34
CMTM3-208ENST00000564247 BMI1P35226 326 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 SULT1A2P50226 295 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 KPRPQ5T749 579 aaPredicted RBP12.93□□□□□ -0.34
CMTM3-208ENST00000564247 FAM122CQ6P4D5 195 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 PATE2Q6UY27 113 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 LINC00305Q7Z4B0 112 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 WFDC9Q8NEX5 89 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 DLX4Q92988 240 aaPredicted RBP12.93□□□□□ -0.34
CMTM3-208ENST00000564247 ZNF414Q96IQ9 312 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 DAZ1Q9NQZ3 744 aaKnown RBP12.93□□□□□ -0.34
CMTM3-208ENST00000564247 UBQLN2Q9UHD9 624 aa12.93□□□□□ -0.34
CMTM3-208ENST00000564247 CRYBB3P26998 211 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 BEAN1Q3B7T3 259 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 TM4SF20Q53R12 229 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 LRRC20Q8TCA0 184 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 GRAMD2BQ96HH9 432 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 MRPL32Q9BYC8 188 aaKnown RBP12.92□□□□□ -0.34
CMTM3-208ENST00000564247 SLC25A39Q9BZJ4 359 aaPredicted RBP12.92□□□□□ -0.34
CMTM3-208ENST00000564247 TMEM231Q9H6L2 316 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 PLA2G2EQ9NZK7 142 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 FUT9Q9Y231 359 aa12.92□□□□□ -0.34
CMTM3-208ENST00000564247 A8MWP6 167 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 OVOL1O14753 267 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 CD33P20138 364 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 CDC34P49427 236 aaPredicted RBP12.91□□□□□ -0.34
CMTM3-208ENST00000564247 TAS2R45P59539 299 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 ZNF767PQ75MW2 155 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 RPP25LQ8N5L8 163 aaKnown RBP12.91□□□□□ -0.34
CMTM3-208ENST00000564247 OR9G4Q8NGQ1 327 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 FAM213BQ8TBF2 198 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 MARC2Q969Z3 335 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 UHRF2Q96PU4 802 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 SHANK2-AS3Q9BTD1 123 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 ELOVL1Q9BW60 279 aa12.91□□□□□ -0.34
CMTM3-208ENST00000564247 IGHV7-4-1A0A0J9YVY3 117 aa12.9□□□□□ -0.34
CMTM3-208ENST00000564247 ZNF705EA8MWA4 302 aaPredicted RBP12.9□□□□□ -0.34
CMTM3-208ENST00000564247 SEC14L6B5MCN3 397 aa12.9□□□□□ -0.34
CMTM3-208ENST00000564247 FAM74A1Q5RGS3 127 aa12.9□□□□□ -0.34
CMTM3-208ENST00000564247 SEPSECSQ9HD40 501 aaKnown RBP12.9□□□□□ -0.34
CMTM3-208ENST00000564247 TECRQ9NZ01 308 aaKnown RBP12.9□□□□□ -0.34
CMTM3-208ENST00000564247 SMPXQ9UHP9 88 aa12.9□□□□□ -0.34
CMTM3-208ENST00000564247 DNAH3Q8TD57 4116 aa12.89□□□□□ -0.35
CMTM3-208ENST00000564247 CTXND1A0A1B0GTU2 59 aa12.89□□□□□ -0.35
CMTM3-208ENST00000564247 C2orf70A6NJV1 201 aa12.89□□□□□ -0.35
CMTM3-208ENST00000564247 ZNF98A6NK75 572 aa12.89□□□□□ -0.35
CMTM3-208ENST00000564247 H3BRN7 92 aa12.89□□□□□ -0.35
CMTM3-208ENST00000564247 TEX46H3BTG2 121 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms