RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SUPT4H1P63272 117 aaKnown RBP7.28□□□□□ -1.24
SF3B3-204ENST00000563739 PRCDQ00LT1 54 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 SOHLH1Q5JUK2 328 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 FAM222AQ5U5X8 452 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 SPATA12Q7Z6I5 190 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 C6orf223Q8N319 242 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 LHFPL5Q8TAF8 219 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 GINS3Q9BRX5 216 aa7.28□□□□□ -1.24
SF3B3-204ENST00000563739 LRP1Q07954 4544 aaKnown RBP7.27□□□□□ -1.25
SF3B3-204ENST00000563739 SSNA1O43805 119 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 SNAPC5O75971 98 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 ATG12O94817 140 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 CDS2O95674 445 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 IFNA21P01568 189 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 IFNA17P01571 189 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 ANXA3P12429 323 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 AKR1C4P17516 323 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 CXCL3P19876 107 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 DHODHQ02127 395 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 MLANAQ16655 118 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 IZUMO4Q1ZYL8 232 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 SPINK9Q5DT21 86 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 PSMG4Q5JS54 123 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 GSG1LQ6UXU4 331 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 H2BFWTQ7Z2G1 175 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 ZNF709Q8N972 641 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 GLYATL2Q8WU03 294 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 RBPMSQ93062 196 aaKnown RBP7.27□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM56Q96MV1 263 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 PRNDQ9UKY0 176 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM56-RWDD3S4R434 201 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 FAT3Q8TDW7 4589 aa7.27□□□□□ -1.25
SF3B3-204ENST00000563739 A0A0G2JRQ6 117 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 FAM90A26D6RGX4 464 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 SPART-AS1P0CW21 52 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 EMP1P54849 157 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 UBE2MP61081 183 aaKnown RBP7.26□□□□□ -1.25
SF3B3-204ENST00000563739 SRPXP78539 464 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 PPP1R1AQ13522 171 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM128Q5BJH2 165 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM268Q5VZI3 342 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 SELENOHQ8IZQ5 122 aaKnown RBP7.26□□□□□ -1.25
SF3B3-204ENST00000563739 C1orf158Q8N1D5 194 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 OR4A16Q8NH70 328 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 RNASE11Q8TAA1 199 aaKnown RBP7.26□□□□□ -1.25
SF3B3-204ENST00000563739 IL22RA2Q969J5 263 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 PINX1Q96BK5 328 aaKnown RBP7.26□□□□□ -1.25
SF3B3-204ENST00000563739 RRNAD1Q96FB5 475 aaKnown RBP7.26□□□□□ -1.25
SF3B3-204ENST00000563739 PRR13Q9NZ81 148 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 KCNIP3Q9Y2W7 256 aa7.26□□□□□ -1.25
SF3B3-204ENST00000563739 OR4E1P0C645 316 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 RNASE2P10153 161 aaKnown RBP7.25□□□□□ -1.25
SF3B3-204ENST00000563739 HLA-DRB4P13762 266 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 VAMP1P23763 118 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 XGP55808 180 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 FXYD7P58549 80 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 RPL11P62913 178 aaKnown RBP7.25□□□□□ -1.25
SF3B3-204ENST00000563739 C16orf54Q6UWD8 224 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 FAM219AQ8IW50 185 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 SLC35G3Q8N808 338 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 ZNF431Q8TF32 576 aaPredicted RBP7.25□□□□□ -1.25
SF3B3-204ENST00000563739 HYLS1Q96M11 299 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 NIPSNAP3BQ9BS92 247 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 FKBP11Q9NYL4 201 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 MGAT4CQ9UBM8 478 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 HLA-DRB4X5D2U9 266 aa7.25□□□□□ -1.25
SF3B3-204ENST00000563739 A0A0B4J2A0 478 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 HELTA6NFD8 242 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 SMLR1H3BR10 107 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 SFT2D2O95562 160 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 GIPP09681 153 aaPredicted RBP7.24□□□□□ -1.25
SF3B3-204ENST00000563739 HTN3P15516 51 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 NPY1RP25929 384 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 FAM3BP58499 235 aaPredicted RBP7.24□□□□□ -1.25
SF3B3-204ENST00000563739 IFITM2Q01629 132 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 DHRS2Q13268 280 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 USF2Q15853 346 aaPredicted RBP7.24□□□□□ -1.25
SF3B3-204ENST00000563739 BSXQ3C1V8 233 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 C4orf46Q504U0 113 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 LGI3Q8N145 548 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 CACNG5Q9UF02 275 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 SHPKQ9UHJ6 478 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 LINC00588Q9Y4M8 146 aa7.24□□□□□ -1.25
SF3B3-204ENST00000563739 PIGBOS1A0A0B4J2F0 54 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 DUXBA0A1W2PPF3 345 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 A6NJY4 79 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 INS-IGF2F8WCM5 200 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 SOCS3O14543 225 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 CLN5O75503 358 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 NXPH3O95157 252 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 PRM2P04554 102 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 INAFM2P0DMQ5 153 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 NPPCP23582 126 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 FUSP35637 526 aaKnown RBP eCLIP7.23□□□□□ -1.25
SF3B3-204ENST00000563739 NPBWR1P48145 328 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 RAP2BP61225 183 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 HSPE1P61604 102 aaKnown RBP7.23□□□□□ -1.25
SF3B3-204ENST00000563739 TIGITQ495A1 244 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 AARDQ4LEZ3 155 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 NMSQ5H8A3 153 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms