RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TSKUQ8WUA8 353 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 ADTRPQ96IZ2 230 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 SLC25A33Q9BSK2 321 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 DYSFO75923 2080 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 C8orf88P0DMB2 117 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 TAS2R45P59539 299 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 FAM27E3Q08E93 113 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 DIAPH2-AS1Q14236 149 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 NEU4Q8WWR8 484 aaPredicted RBP9.16□□□□□ -0.94
CUX1-218ENST00000560541 COMMD5Q9GZQ3 224 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 ZNF355PQ9NSJ1 428 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 ZNF835Q9Y2P0 537 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 SLC25A48Q6ZT89 311 aaKnown RBP9.15□□□□□ -0.94
CUX1-218ENST00000560541 OSTCQ9NRP0 149 aa9.15□□□□□ -0.94
CUX1-218ENST00000560541 JKAMPQ9P055 326 aa9.15□□□□□ -0.94
CUX1-218ENST00000560541 TIMM8BQ9Y5J9 83 aaPredicted RBP9.15□□□□□ -0.94
CUX1-218ENST00000560541 SPCS1Q9Y6A9 102 aa9.15□□□□□ -0.94
CUX1-218ENST00000560541 CSMD1Q96PZ7 3565 aa9.15□□□□□ -0.94
CUX1-218ENST00000560541 K7EP34 96 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 CRYGCP07315 174 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 CD69Q07108 199 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 POU2AF1Q16633 256 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 TIMM23BQ5SRD1 257 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 OR10AG1Q8NH19 301 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 IGF2BP2-AS1Q96M15 143 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 PMCHL2Q9BQD1 86 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 SSBP4Q9BWG4 385 aaPredicted RBP9.15□□□□□ -0.95
CUX1-218ENST00000560541 SLC25A2Q9BXI2 301 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 RPUSD1Q9UJJ7 312 aaKnown RBP9.15□□□□□ -0.95
CUX1-218ENST00000560541 ZNF257Q9Y2Q1 563 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 AKAP13Q12802 2813 aa9.15□□□□□ -0.95
CUX1-218ENST00000560541 ANKRD11Q6UB99 2663 aaPredicted RBP9.15□□□□□ -0.95
CUX1-218ENST00000560541 TRBV9A0A0B4J1U6 114 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 REG1AP05451 166 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 APELAP0DMC3 54 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 ATP5J2P56134 94 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 ANXA2RQ3ZCQ2 193 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 C2orf83Q53S99 150 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 ACACAQ13085 2346 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 OR4C46A6NHA9 309 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 H0YJW9 148 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 M0R2Z0 102 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 ISLRO14498 428 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 HSBP1O75506 76 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 AMY1AP04745 511 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 GNG5P63218 68 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 FAM167A-AS1Q96KT0 104 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 RAB9BQ9NP90 201 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 FAM215AQ9Y5M1 114 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 BSNQ9UPA5 3926 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 IGLV3-9A0A075B6K5 115 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 APCSP02743 223 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 IGFL2Q6UWQ7 119 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 NPIPB3Q92617 1050 aa9.14□□□□□ -0.95
CUX1-218ENST00000560541 MBD3L4A6NDZ8 208 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 MBD3L3A6NE82 208 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 MBD3L5A6NJ08 208 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 SH2D7A6NKC9 451 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 COX7A2P2O60397 106 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 MT-ND6P03923 174 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 UBE2G1P62253 170 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 TNXAQ16473 311 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 MBD3L2Q8NHZ7 208 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 MRPL36Q9P0J6 103 aaKnown RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 AMMECR1Q9Y4X0 333 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 A0A1W2PRE2 83 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 FNDC10F2Z333 226 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 MFAP2P55001 183 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 RPL8P62917 257 aaKnown RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 RNASEKQ6P5S7 137 aaKnown RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 OR8B2Q96RD0 313 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 ST20Q9HBF5 79 aa9.13□□□□□ -0.95
CUX1-218ENST00000560541 ZNF331Q9NQX6 463 aaPredicted RBP9.13□□□□□ -0.95
CUX1-218ENST00000560541 SMIM27A0A1W2PRY6 76 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 FTH1P19P0C7X4 201 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 HTR1DP28221 377 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 GPR183P32249 361 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 ARL3P36405 182 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 GATA4P43694 442 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 CAMPP49913 170 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 WT1-ASQ06250 92 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 C19orf35Q6ZS72 473 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 FAM169BQ8N8A8 192 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 OR1L8Q8NGR8 309 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 H1FXQ92522 213 aaKnown RBP9.12□□□□□ -0.95
CUX1-218ENST00000560541 IGHV3-21A0A0B4J1V1 117 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 A0A0G2JLM5 398 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 hADV38S2A0JD32 116 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 H3BTX0 84 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 TSPAN13O95857 204 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 MOSP00540 346 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 ERHP84090 104 aaKnown RBP9.12□□□□□ -0.95
CUX1-218ENST00000560541 PRB3Q04118 309 aaPredicted RBP9.12□□□□□ -0.95
CUX1-218ENST00000560541 OR10J3Q5JRS4 329 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 RUSC1-AS1Q66K80 236 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 ADAMTSL5Q6ZMM2 481 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 PAXXQ9BUH6 204 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 NDUFA4L2Q9NRX3 87 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 ZZEF1O43149 2961 aa9.12□□□□□ -0.95
CUX1-218ENST00000560541 FAM181BA6NEQ2 426 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms