RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 NPIPB3Q92617 1050 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 OR5B12Q96R08 314 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 PFDN5Q99471 154 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 TXN2Q99757 166 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 FAM103A1Q9BTL3 118 aaKnown RBP10.72□□□□□ -0.69
LDLR-213ENST00000560502 GAR1Q9NY12 217 aaKnown RBP10.72□□□□□ -0.69
LDLR-213ENST00000560502 DMRT1Q9Y5R6 373 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 RFNGQ9Y644 331 aa10.72□□□□□ -0.69
LDLR-213ENST00000560502 IGKV1OR2-108A0A075B7D4 117 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 A0A1W2PPV4 95 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 MAP1LC3B2A6NCE7 125 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 ZFP92A6NM28 416 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 K7EIM0 57 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 NDUFS6O75380 124 aaKnown RBP10.71□□□□□ -0.69
LDLR-213ENST00000560502 FRMD6-AS1P0C7T7 363 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 APELAP0DMC3 54 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 NPBWR1P48145 328 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 PPT1P50897 306 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 RHOBP62745 196 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 MIC13Q5XKP0 118 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 SPSB3Q6PJ21 355 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 OR1L4Q8NGR5 311 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 SFT2D1Q8WV19 159 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 DLX4Q92988 240 aaPredicted RBP10.71□□□□□ -0.69
LDLR-213ENST00000560502 FAM210AQ96ND0 272 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 FANCD2OSQ96PS1 177 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 MAP1LC3BQ9GZQ8 125 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 BIRC6Q9NR09 4857 aa10.71□□□□□ -0.69
LDLR-213ENST00000560502 LCE6AA0A183 80 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 CLN5O75503 358 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 YIF1AO95070 293 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 IFNA1P01562 189 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 LINC00869P0C866 280 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 GP9P14770 177 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 ZP3P21754 424 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 SLURP1P55000 103 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 MFAP4P55083 255 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 PEA15Q15121 130 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 ZNF726P1Q15940 193 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 GATAD1Q8WUU5 269 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 MRPL32Q9BYC8 188 aaKnown RBP10.7□□□□□ -0.7
LDLR-213ENST00000560502 VSIRQ9H7M9 311 aa10.7□□□□□ -0.7
LDLR-213ENST00000560502 IGKV1D-37A0A075B6S9 117 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 ELOA3CA0A087WX78 387 aaPredicted RBP10.69□□□□□ -0.7
LDLR-213ENST00000560502 TRBV9A0A0B4J1U6 114 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 FAM223BA6NKX1 122 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 SAP30O75446 220 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 LGALS1P09382 135 aaKnown RBP10.69□□□□□ -0.7
LDLR-213ENST00000560502 PSMB3P49720 205 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 PLP1P60201 277 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 MLANAQ16655 118 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 ECSCRQ19T08 205 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 FAM122CQ6P4D5 195 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 FAM223AQ8IWN6 122 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 NECAP1Q8NC96 275 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 BPIFCQ8NFQ6 507 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 RAB24Q969Q5 203 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 SLC25A22Q9H936 323 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 MANBALQ9NQG1 85 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 STARD9Q9P2P6 4700 aa10.69□□□□□ -0.7
LDLR-213ENST00000560502 CSMD3Q7Z407 3707 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 IGHV4OR15-8A0A075B7B6 117 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 A0A087WW49 117 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 ANKRD34BA5PLL1 514 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 LINC01619G3V211 115 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 CD5P06127 495 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 OR5G3P0C626 314 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 IGLC1P0CG04 106 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 TAS2R45P59539 299 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 GUK1Q16774 197 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 TOR2AQ5JU69 321 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 S100A7AQ86SG5 101 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 TM2D3Q9BRN9 247 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 C21orf62Q9NYP8 219 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 LYSTQ99698 3801 aa10.68□□□□□ -0.7
LDLR-213ENST00000560502 CXorf1O96002 111 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 STAG3L2P0CL84 134 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 STAG3L3P0CL85 134 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 YPEL3P61236 119 aaPredicted RBP10.67□□□□□ -0.7
LDLR-213ENST00000560502 KHDC3LQ587J8 217 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 FAM209BQ5JX69 171 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 LCN15Q6UWW0 184 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 C19orf35Q6ZS72 473 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 OR5T1Q8NG75 326 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 MRPL36Q9P0J6 103 aaKnown RBP10.67□□□□□ -0.7
LDLR-213ENST00000560502 FBXL7Q9UJT9 491 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 FUT9Q9Y231 359 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 ARL2-SNX15V9GYD0 113 aa10.67□□□□□ -0.7
LDLR-213ENST00000560502 TRBV7-1A0A0A6YYK4 115 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 RBFOX3A6NFN3 312 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 GNG7O60262 68 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 COX7A2P2O60397 106 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 TOMM40O96008 361 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 S100A7P31151 101 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 ZNF506Q5JVG8 444 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 PQLC2Q6ZP29 291 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 TXNDC17Q9BRA2 123 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 ZMAT4Q9H898 229 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 EDA2RQ9HAV5 297 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 DNAJC4Q9NNZ3 241 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms