RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 CCL25O15444 150 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 GADD45GO95257 159 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 IGLV1-51P01701 117 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 HLA-EP13747 358 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 ZNF25P17030 456 aaPredicted RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 ERP29P30040 261 aaKnown RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 SERPINB9P50453 376 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 DSCR4P56555 118 aaPredicted RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 ARF6P62330 175 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 REEP5Q00765 189 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 PSG9Q00887 426 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 KRR1Q13601 381 aaKnown RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 SPA17Q15506 151 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 LIN52Q52LA3 116 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 LYRM7Q5U5X0 104 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 DHRS4L2Q6PKH6 230 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 TEX261Q6UWH6 196 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 PATE2Q6UY27 113 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 ZNF833PQ6ZTB9 187 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 EXOC3-AS1Q8N2X6 119 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 SLC30A7Q8NEW0 376 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 OR2T35Q8NGX2 323 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 OR10K1Q8NGX5 313 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 PPTC7Q8NI37 304 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 TP53RKQ96S44 253 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 AMELYQ99218 206 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 GPER1Q99527 375 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 LINC00467Q9BRT7 94 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 C9orf16Q9BUW7 83 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 CCDC94Q9BW85 323 aaPredicted RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 C6orf62Q9GZU0 229 aaPredicted RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 CDC42SE1Q9NRR8 79 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 PRNDQ9UKY0 176 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 ARL5AQ9Y689 179 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 U3KQ87 197 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 PLXND1Q9Y4D7 1925 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 LAMA4Q16363 1823 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 MEGF8Q7Z7M0 2845 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 MCM3APO60318 1980 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 SCN3AQ9NY46 2000 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 CEP192Q8TEP8 1941 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 ECM29Q5VYK3 1845 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 TRAV10A0A0B4J240 114 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 CCDC160A6NGH7 325 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 AIPO00170 330 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 NDUFB3O43676 98 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 TIMM17BO60830 172 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 GGCTO75223 188 aaKnown RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 ATP5HO75947 161 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 SERPINA1P01009 418 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 IFNA7P01567 189 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 DYNLT3P51808 116 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 EFNA4P52798 201 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 DEFA3P59666 94 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 NCALDP61601 193 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 RHOBP62745 196 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 MRPS25P82663 173 aaKnown RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 C1orf134Q5TEV5 83 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 LINC00322Q6ZN03 302 aaPredicted RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 PHF5AQ7RTV0 110 aaKnown RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 SBSPONQ8IVN8 264 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 CLECL1Q8IZS7 167 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 LINC00301Q8NCQ3 95 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 NUP35Q8NFH5 326 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 PXT1Q8NFP0 134 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 TMEM254Q8TBM7 123 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 DGCR14Q96DF8 476 aaKnown RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 CHMP6Q96FZ7 201 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 LINC00052Q96N35 136 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 SLC25A21Q9BQT8 299 aaPredicted RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 SH3BGRL3Q9H299 93 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 ENY2Q9NPA8 101 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 ORMDL1Q9P0S3 153 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 OPTCQ9UBM4 332 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 PYCARDQ9ULZ3 195 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 ARL2BPQ9Y2Y0 163 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 FAM32AQ9Y421 112 aaKnown RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 ASB4Q9Y574 426 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 LY96Q9Y6Y9 160 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 SCN10AQ9Y5Y9 1956 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 CNTRLQ7Z7A1 2325 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 KDM6AO15550 1401 aaPredicted RBP0.11□□□□□ -2.39
SPG11-222ENST00000560435 TNS3Q68CZ2 1445 aa0.11□□□□□ -2.39
SPG11-222ENST00000560435 TAF1LQ8IZX4 1826 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 OBSL1O75147 1896 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 EIF3AQ14152 1382 aaKnown RBP0.1□□□□□ -2.39
SPG11-222ENST00000560435 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.1□□□□□ -2.39
SPG11-222ENST00000560435 TRAV27A0A087WT01 109 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 TRAV5A0A0B4J249 113 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 DUXBA0A1W2PPF3 345 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 A0A1W2PPM0 123 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 TLCD2A6NGC4 264 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 C17orf112F2Z3M2 114 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 K7EIL1 84 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 TMEM256-PLSCR3K7ERE1 68 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 HMGB3O15347 200 aaKnown RBP0.1□□□□□ -2.39
SPG11-222ENST00000560435 MFSD11O43934 449 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 KLF7O75840 302 aaPredicted RBP0.1□□□□□ -2.39
SPG11-222ENST00000560435 NDUFC2O95298 119 aa0.1□□□□□ -2.39
SPG11-222ENST00000560435 IGHV3-33P01772 117 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms