RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 LINC00869P0C866 280 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 NHLRC4P0CG21 123 aaPredicted RBP9.72□□□□□ -0.85
NEDD8-208ENST00000560427 LYL1P12980 280 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 THAP6Q8TBB0 222 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 CHAC2Q8WUX2 184 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 RNF126Q9BV68 326 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 WDR83OSQ9Y284 106 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 SELENOKQ9Y6D0 94 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 DNASE2O00115 360 aaPredicted RBP9.71□□□□□ -0.86
NEDD8-208ENST00000560427 AGPAT2O15120 278 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 CAMLGP49069 296 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 RAP2BP61225 183 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 RPL11P62913 178 aaKnown RBP9.71□□□□□ -0.86
NEDD8-208ENST00000560427 SIGLEC15Q6ZMC9 328 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 PPP1R14BQ96C90 147 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 MS4A6AQ9H2W1 248 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 TUBA4BQ9H853 241 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 MBD2Q9UBB5 411 aa9.71□□□□□ -0.86
NEDD8-208ENST00000560427 UBE2L5PA0A1B0GUS4 154 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 HYPMO75409 117 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 ORM2P19652 201 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 GATA2P23769 480 aaPredicted RBP9.7□□□□□ -0.86
NEDD8-208ENST00000560427 ODF3L2Q3SX64 289 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 SAMD13Q5VXD3 122 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 TMEM182Q6ZP80 229 aaPredicted RBP9.7□□□□□ -0.86
NEDD8-208ENST00000560427 STXBP6Q8NFX7 210 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 OR5C1Q8NGR4 320 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 OR1B1Q8NGR6 318 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 GPR82Q96P67 336 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 MGST2Q99735 147 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 SEPSECSQ9HD40 501 aaKnown RBP9.7□□□□□ -0.86
NEDD8-208ENST00000560427 NRN1Q9NPD7 142 aa9.7□□□□□ -0.86
NEDD8-208ENST00000560427 IGKV3-7A0A075B6H7 116 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 ELOA3CA0A087WX78 387 aaPredicted RBP9.69□□□□□ -0.86
NEDD8-208ENST00000560427 H3BRN7 92 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 K7EQG2 157 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 RPL12P30050 165 aaKnown RBP9.69□□□□□ -0.86
NEDD8-208ENST00000560427 NHLH2Q02577 135 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 OR8I2Q8N0Y5 310 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 DEFB125Q8N687 156 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 DCANP1Q8TF63 244 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 GGTLC1Q9BX51 225 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 SRD5A3Q9H8P0 318 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 KCNIP2Q9NS61 270 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 HIGD1AQ9Y241 93 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 HSPB11Q9Y547 144 aa9.69□□□□□ -0.86
NEDD8-208ENST00000560427 ZNF98A6NK75 572 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 GALR1P47211 349 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 RPL29P47914 159 aaKnown RBP9.68□□□□□ -0.86
NEDD8-208ENST00000560427 TFPI2P48307 235 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 PRR20EP86478 221 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 PRR20CP86479 221 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 PRR20DP86480 221 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 PRR20BP86481 221 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 PRR20AP86496 221 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 OPCMLQ14982 345 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 LINC00322Q6ZN03 302 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-208ENST00000560427 Q6ZRG5 221 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 GBGT1Q8N5D6 347 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 STPG3Q8N7X2 389 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 PFDN5Q99471 154 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 ATP5SQ99766 215 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 SHANK2-AS3Q9BTD1 123 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 SLC25A39Q9BZJ4 359 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-208ENST00000560427 WFDC10AQ9H1F0 79 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 MAP6D1Q9H9H5 199 aa9.68□□□□□ -0.86
NEDD8-208ENST00000560427 OR5G3P0C626 314 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 RPL7P18124 248 aaKnown RBP9.67□□□□□ -0.86
NEDD8-208ENST00000560427 FGF7P21781 194 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 MEOX2P50222 304 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 SNRPD3P62318 126 aaKnown RBP9.67□□□□□ -0.86
NEDD8-208ENST00000560427 CLINT1Q14677 625 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 OR1L4Q8NGR5 311 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 AQP10Q96PS8 301 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 NPCDR1Q9BY65 106 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 ARL6Q9H0F7 186 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 ARV1Q9H2C2 271 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 DOK5Q9P104 306 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 UBQLN2Q9UHD9 624 aa9.67□□□□□ -0.86
NEDD8-208ENST00000560427 COX7A2P2O60397 106 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 B2MP61769 119 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 WFDC3Q8IUB2 231 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 SBSPONQ8IVN8 264 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 OR2T35Q8NGX2 323 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 SCRT1Q9BWW7 348 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 PARD6GQ9BYG4 376 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-208ENST00000560427 WDR61Q9GZS3 305 aaKnown RBP9.66□□□□□ -0.86
NEDD8-208ENST00000560427 SLC25A22Q9H936 323 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 SLC39A9Q9NUM3 307 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 PXMP4Q9Y6I8 212 aa9.66□□□□□ -0.86
NEDD8-208ENST00000560427 LOC102724200A0A096LPH7 203 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-208ENST00000560427 C17orf112F2Z3M2 114 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 IFNA5P01569 189 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 ID1P41134 155 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 ZNF709Q8N972 641 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 TM2D3Q9BRN9 247 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 SLC25A32Q9H2D1 315 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 ZMAT4Q9H898 229 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 DNAJC4Q9NNZ3 241 aa9.65□□□□□ -0.86
NEDD8-208ENST00000560427 KIR2DL5BA0A0G2JN68 375 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms