RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 OR1B1Q8NGR6 318 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 NPCDR1Q9BY65 106 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 ARL6Q9H0F7 186 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 DNAJC4Q9NNZ3 241 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 SLC39A9Q9NUM3 307 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 HIGD1AQ9Y241 93 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 PXMP4Q9Y6I8 212 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 MGAM2Q2M2H8 2515 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 HELTA6NFD8 242 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 BCL2L11O43521 198 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 ZNF207O43670 478 aaKnown RBP7.02□□□□□ -1.29
LDLR-210ENST00000559340 PAFAH1B2P68402 229 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 SERF2P84101 59 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 PRR20EP86478 221 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 PRR20CP86479 221 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 PRR20DP86480 221 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 PRR20BP86481 221 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 PRR20AP86496 221 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 ACOT6Q3I5F7 207 aaPredicted RBP7.02□□□□□ -1.29
LDLR-210ENST00000559340 C1orf194Q5T5A4 169 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 C10orf113Q5VZT2 155 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 MIC13Q5XKP0 118 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 EIF5AL1Q6IS14 154 aaKnown RBP7.02□□□□□ -1.29
LDLR-210ENST00000559340 LCN12Q6JVE5 192 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 RBPMS2Q6ZRY4 209 aaKnown RBP7.02□□□□□ -1.29
LDLR-210ENST00000559340 STPG3Q8N7X2 389 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 GATAD1Q8WUU5 269 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 GPR82Q96P67 336 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 PSMG3Q9BT73 122 aaPredicted RBP7.02□□□□□ -1.29
LDLR-210ENST00000559340 RHPN1-AS1Q9BWJ2 59 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 WFDC1Q9HC57 220 aa7.02□□□□□ -1.29
LDLR-210ENST00000559340 IGHV3OR16-8A0A075B7F1 116 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 CHEK1O14757 476 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 IGLL1P15814 213 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 CXCL2P19875 107 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 GATA2P23769 480 aaPredicted RBP7.01□□□□□ -1.29
LDLR-210ENST00000559340 CMC4P56277 68 aaPredicted RBP7.01□□□□□ -1.29
LDLR-210ENST00000559340 USF2Q15853 346 aaPredicted RBP7.01□□□□□ -1.29
LDLR-210ENST00000559340 DEFB114Q30KQ6 69 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 FFAR4Q5NUL3 377 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 RPL7L1Q6DKI1 246 aaKnown RBP7.01□□□□□ -1.29
LDLR-210ENST00000559340 IL34Q6ZMJ4 242 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 OR8I2Q8N0Y5 310 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 HSD17B11Q8NBQ5 300 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 ZNF471Q9BX82 626 aaPredicted RBP7.01□□□□□ -1.29
LDLR-210ENST00000559340 ARV1Q9H2C2 271 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 VSIRQ9H7M9 311 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 U3KQE9 123 aa7.01□□□□□ -1.29
LDLR-210ENST00000559340 BUB3O43684 328 aa7□□□□□ -1.29
LDLR-210ENST00000559340 IGLV1-51P01701 117 aa7□□□□□ -1.29
LDLR-210ENST00000559340 TPT1P13693 172 aaKnown RBP7□□□□□ -1.29
LDLR-210ENST00000559340 RPL7P18124 248 aaKnown RBP7□□□□□ -1.29
LDLR-210ENST00000559340 ATP6V0CP27449 155 aa7□□□□□ -1.29
LDLR-210ENST00000559340 GALR1P47211 349 aa7□□□□□ -1.29
LDLR-210ENST00000559340 RPL11P62913 178 aaKnown RBP7□□□□□ -1.29
LDLR-210ENST00000559340 LGALSLQ3ZCW2 172 aaPredicted RBP7□□□□□ -1.29
LDLR-210ENST00000559340 C16orf54Q6UWD8 224 aa7□□□□□ -1.29
LDLR-210ENST00000559340 TMEM182Q6ZP80 229 aaPredicted RBP7□□□□□ -1.29
LDLR-210ENST00000559340 TCF24Q7RTU0 167 aa7□□□□□ -1.29
LDLR-210ENST00000559340 OR2G3Q8NGZ4 309 aa7□□□□□ -1.29
LDLR-210ENST00000559340 RSG1Q9BU20 258 aa7□□□□□ -1.29
LDLR-210ENST00000559340 MRPL32Q9BYC8 188 aaKnown RBP7□□□□□ -1.29
LDLR-210ENST00000559340 SLC25A39Q9BZJ4 359 aaPredicted RBP7□□□□□ -1.29
LDLR-210ENST00000559340 DOK5Q9P104 306 aa7□□□□□ -1.29
LDLR-210ENST00000559340 IGHV3-49A0A0A0MS15 119 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 A0A1W2PPV4 95 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 ZNF98A6NK75 572 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 DNASE2O00115 360 aaPredicted RBP6.99□□□□□ -1.29
LDLR-210ENST00000559340 M6PRP20645 277 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 MEOX2P50222 304 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 TAS2R45P59539 299 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 RHOBP62745 196 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 AKR1C8PQ5T2L2 129 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 SAMD13Q5VXD3 122 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 LINC00305Q7Z4B0 112 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 SLC51BQ86UW2 128 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 BAP18Q8IXM2 172 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 STXBP6Q8NFX7 210 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 ST8SIA2Q92186 375 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 ZNF414Q96IQ9 312 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 SHANK2-AS3Q9BTD1 123 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 CYTL1Q9NRR1 136 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 MLXQ9UH92 298 aa6.99□□□□□ -1.29
LDLR-210ENST00000559340 IGHV3OR16-13A0A075B7E8 117 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 IGHV3-74A0A0B4J1X5 117 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 TRAV2A0A0B4J234 112 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 OR4C46A6NHA9 309 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 ZNF785A8K8V0 405 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 UMAD1C9J7I0 102 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 H3BRN7 92 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 TSPAN4O14817 238 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 SEC11BP0C7V7 166 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 ATF4P18848 351 aaPredicted RBP6.98□□□□□ -1.29
LDLR-210ENST00000559340 CD300CQ08708 224 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 GUCA2BQ16661 112 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 CD300EQ496F6 205 aaPredicted RBP6.98□□□□□ -1.29
LDLR-210ENST00000559340 OXLD1Q5BKU9 147 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 FAM78BQ5VT40 261 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 PATE2Q6UY27 113 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 SIGLEC15Q6ZMC9 328 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms