RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TMEM37Q8WXS4 190 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 RNF2Q99496 336 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 PARD6GQ9BYG4 376 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-227ENST00000557269 ARL6Q9H0F7 186 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 SLC39A9Q9NUM3 307 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 RABAC1Q9UI14 185 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 PXMP4Q9Y6I8 212 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 BUB3O43684 328 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 HYPMO75409 117 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 CFDP00746 253 aaPredicted RBP9.66□□□□□ -0.86
SHMT2-227ENST00000557269 OR5G3P0C626 314 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 INSL3P51460 131 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 MORN5Q5VZ52 161 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 FAM90A2PQ658T7 463 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 TMUB2Q71RG4 321 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 TMEM61Q8N0U2 210 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 HSD17B11Q8NBQ5 300 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 UHRF2Q96PU4 802 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 NOTCH3Q9UM47 2321 aa9.66□□□□□ -0.86
SHMT2-227ENST00000557269 A0A0D9SG52 128 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 NKX2-5P52952 324 aaPredicted RBP9.65□□□□□ -0.86
SHMT2-227ENST00000557269 B2MP61769 119 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 EGFEM1PQ0D2K5 195 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 ZNF266Q14584 549 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 BEAN1Q3B7T3 259 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 ZFP69Q49AA0 526 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 LEMD1Q68G75 181 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 LAMTOR1Q6IAA8 161 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 C16orf54Q6UWD8 224 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 GLMPQ8WWB7 406 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 HYLS1Q96M11 299 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 ARPC5LQ9BPX5 153 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 SCRT1Q9BWW7 348 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 SLC25A39Q9BZJ4 359 aaPredicted RBP9.65□□□□□ -0.86
SHMT2-227ENST00000557269 SH3BGRL3Q9H299 93 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 ARV1Q9H2C2 271 aa9.65□□□□□ -0.86
SHMT2-227ENST00000557269 TECRQ9NZ01 308 aaKnown RBP9.65□□□□□ -0.86
SHMT2-227ENST00000557269 MGAM2Q2M2H8 2515 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 ZNF785A8K8V0 405 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 H3BRN7 92 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 TAAR5O14804 337 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 BCL2L11O43521 198 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 COX7A2P2O60397 106 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 ATP6V0CP27449 155 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 KPRPQ5T749 579 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-227ENST00000557269 TCF24Q7RTU0 167 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 C9orf62Q8N4C0 152 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 ZNF709Q8N972 641 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 SHANK2-AS3Q9BTD1 123 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 DNAJC4Q9NNZ3 241 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 HIGD1AQ9Y241 93 aa9.64□□□□□ -0.87
SHMT2-227ENST00000557269 IGKV3-7A0A075B6H7 116 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 BORCS7-ASMTA0A0B4J1R7 106 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 TRAV5A0A0B4J249 113 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 ZNF98A6NK75 572 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 C17orf112F2Z3M2 114 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 PRB2P02812 416 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-227ENST00000557269 FFAR4Q5NUL3 377 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 PXDC1Q5TGL8 231 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 C10orf113Q5VZT2 155 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 Q6ZRG5 221 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 PPP1R14BQ96C90 147 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 GPR61Q9BZJ8 451 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 TIMM9Q9Y5J7 89 aa9.63□□□□□ -0.87
SHMT2-227ENST00000557269 A0A1W2PS18 150 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 PFDN1O60925 122 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 JTBO76095 146 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 SPATA31B1PQ5VZV4 182 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 LINC00305Q7Z4B0 112 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 GBGT1Q8N5D6 347 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 OR2K2Q8NGT1 345 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 NARS2Q96I59 477 aaKnown RBP9.62□□□□□ -0.87
SHMT2-227ENST00000557269 C17orf77Q96MU5 243 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 SLC25A32Q9H2D1 315 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 SLC25A22Q9H936 323 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 SEPSECSQ9HD40 501 aaKnown RBP9.62□□□□□ -0.87
SHMT2-227ENST00000557269 PLA2G2EQ9NZK7 142 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 SMAD5-AS1Q9Y6J3 95 aa9.62□□□□□ -0.87
SHMT2-227ENST00000557269 ELOA3CA0A087WX78 387 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-227ENST00000557269 KANTRA0A1W2PQU2 76 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 TSPAN4O14817 238 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 EIF3GO75821 320 aaKnown RBP eCLIP9.61□□□□□ -0.87
SHMT2-227ENST00000557269 BMI1P35226 326 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 RAB2AP61019 212 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 GUCA2BQ16661 112 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 C1orf194Q5T5A4 169 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 LCN12Q6JVE5 192 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 RBPMS2Q6ZRY4 209 aaKnown RBP9.61□□□□□ -0.87
SHMT2-227ENST00000557269 OR1L4Q8NGR5 311 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 GRAMD2BQ96HH9 432 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 PRR25Q96S07 402 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 PSMG3Q9BT73 122 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-227ENST00000557269 ZNF471Q9BX82 626 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-227ENST00000557269 TMEM231Q9H6L2 316 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 KCNIP2Q9NS61 270 aa9.61□□□□□ -0.87
SHMT2-227ENST00000557269 ZNF256Q9Y2P7 627 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-227ENST00000557269 TRAV25A0A0B4J276 109 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 MRPS12O15235 138 aaKnown RBP9.6□□□□□ -0.87
SHMT2-227ENST00000557269 GP9P14770 177 aa9.6□□□□□ -0.87
SHMT2-227ENST00000557269 TFPI2P48307 235 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms