RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ZNF546Q86UE3 836 aa13.08□□□□□ -0.32
SHMT2-225ENST00000556798 CHAC2Q8WUX2 184 aa13.08□□□□□ -0.32
SHMT2-225ENST00000556798 ASB13Q8WXK3 278 aa13.08□□□□□ -0.32
SHMT2-225ENST00000556798 SMIM3Q9BZL3 60 aa13.08□□□□□ -0.32
SHMT2-225ENST00000556798 UBQLN2Q9UHD9 624 aa13.08□□□□□ -0.32
SHMT2-225ENST00000556798 CAMLGP49069 296 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 SELENOTP62341 195 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 WFDC3Q8IUB2 231 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 STXBP6Q8NFX7 210 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 OR2T35Q8NGX2 323 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 GGTLC1Q9BX51 225 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 MS4A6AQ9H2W1 248 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 SLC45A2Q9UMX9 530 aa13.07□□□□□ -0.32
SHMT2-225ENST00000556798 OR4C46A6NHA9 309 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 OR5G3P0C626 314 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 IGHV4-30-4P0DP06 118 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 FGL1Q08830 312 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 RAB31Q13636 194 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 MIC13Q5XKP0 118 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 DEFB125Q8N687 156 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 ARL6Q9H0F7 186 aa13.06□□□□□ -0.32
SHMT2-225ENST00000556798 HELTA6NFD8 242 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 OR11H12B2RN74 326 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 G3V3Q6 166 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 DNASE2O00115 360 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-225ENST00000556798 HYPMO75409 117 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 CD5P06127 495 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 NUP62P37198 522 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-225ENST00000556798 PAFAH1B2P68402 229 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 ODF3L2Q3SX64 289 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 SIGLEC15Q6ZMC9 328 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 UHRF2Q96PU4 802 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 SCRT1Q9BWW7 348 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 SLC25A22Q9H936 323 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 C19orf73Q9NVV2 129 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 PFDN2Q9UHV9 154 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 HIGD1AQ9Y241 93 aa13.05□□□□□ -0.32
SHMT2-225ENST00000556798 DNAH9Q9NYC9 4486 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 FXYD6-FXYD2A0A087WZ82 144 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 SMLR1H3BR10 107 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 FRMD6-AS1P0C7T7 363 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 PLP1P60201 277 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 OPCMLQ14982 345 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 LEMD1Q68G75 181 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 PATE2Q6UY27 113 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 FAM24BQ8N5W8 94 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 ATP5SQ99766 215 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 NPCDR1Q9BY65 106 aa13.04□□□□□ -0.32
SHMT2-225ENST00000556798 TGP01266 2768 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 ZNF98A6NK75 572 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 H3BRN7 92 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 PRR20EP86478 221 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 PRR20CP86479 221 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 PRR20DP86480 221 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 PRR20BP86481 221 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 PRR20AP86496 221 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 Q6ZNX1 250 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 OR8I2Q8N0Y5 310 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 SLC25A39Q9BZJ4 359 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-225ENST00000556798 WDR61Q9GZS3 305 aaKnown RBP13.03□□□□□ -0.32
SHMT2-225ENST00000556798 ARV1Q9H2C2 271 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 SLC25A32Q9H2D1 315 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 TUBA4BQ9H853 241 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 SRD5A3Q9H8P0 318 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 WFDC1Q9HC57 220 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 PXMP4Q9Y6I8 212 aa13.03□□□□□ -0.32
SHMT2-225ENST00000556798 COX7A2P2O60397 106 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 C1orf194Q5T5A4 169 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 ASCL2Q99929 193 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 B9D2Q9BPU9 175 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 SHANK2-AS3Q9BTD1 123 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 MAP6D1Q9H9H5 199 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 SLC39A9Q9NUM3 307 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 FBXL17Q9UF56 701 aa13.02□□□□□ -0.33
SHMT2-225ENST00000556798 K7EQG2 157 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 MPDU1O75352 247 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 RPL29P47914 159 aaKnown RBP13.01□□□□□ -0.33
SHMT2-225ENST00000556798 AP2S1P53680 142 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-225ENST00000556798 B2MP61769 119 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 ZNF124Q15973 351 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 PXDC1Q5TGL8 231 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 APRG1Q8IVJ8 170 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 DCANP1Q8TF63 244 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 TMEM37Q8WXS4 190 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 AQP10Q96PS8 301 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 CITED4Q96RK1 184 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 NRN1Q9NPD7 142 aa13.01□□□□□ -0.33
SHMT2-225ENST00000556798 AGRNO00468 2067 aa13□□□□□ -0.33
SHMT2-225ENST00000556798 hCG_2014768A0A024R1R8 64 aa13□□□□□ -0.33
SHMT2-225ENST00000556798 TRAV2A0A0B4J234 112 aa13□□□□□ -0.33
SHMT2-225ENST00000556798 A8MZ25 164 aa13□□□□□ -0.33
SHMT2-225ENST00000556798 Q6ZRG5 221 aa13□□□□□ -0.33
SHMT2-225ENST00000556798 LINC00305Q7Z4B0 112 aa13□□□□□ -0.33
SHMT2-225ENST00000556798 RNF222A6NCQ9 220 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 IFNA5P01569 189 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 ZNF688P0C7X2 276 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 S100A7P31151 101 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 GCSAMLQ5JQS6 135 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 MORN5Q5VZ52 161 aa12.99□□□□□ -0.33
SHMT2-225ENST00000556798 C10orf113Q5VZT2 155 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms