RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 C16orf54Q6UWD8 224 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 ZNF546Q86UE3 836 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 OR5C1Q8NGR4 320 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 B9D2Q9BPU9 175 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 MS4A6AQ9H2W1 248 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 BUB3O43684 328 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 HYPMO75409 117 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 S100A7P31151 101 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 CAMLGP49069 296 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 AP2S1P53680 142 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 RAP2BP61225 183 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 CLINT1Q14677 625 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 SIGLEC15Q6ZMC9 328 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 OR8I2Q8N0Y5 310 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 GLMPQ8WWB7 406 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 MGST2Q99735 147 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 ARL6Q9H0F7 186 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 SRD5A3Q9H8P0 318 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 SLC25A22Q9H936 323 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 WDR83OSQ9Y284 106 aa8.56□□□□□ -1.04
CCDC88C-212ENST00000556767 GIPP09681 153 aaPredicted RBP8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 FGF7P21781 194 aa8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 RPL12P30050 165 aaKnown RBP8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 CMC4P56277 68 aaPredicted RBP8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 VWC2Q2TAL6 325 aa8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 SMIM3Q9BZL3 60 aa8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 SLC45A2Q9UMX9 530 aa8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 HIGD1AQ9Y241 93 aa8.55□□□□□ -1.04
CCDC88C-212ENST00000556767 FGL1Q08830 312 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 ODF3L2Q3SX64 289 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 C1orf194Q5T5A4 169 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 MIC13Q5XKP0 118 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 Q6ZRG5 221 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 S100A7AQ86SG5 101 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 STPG3Q8N7X2 389 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 ASB13Q8WXK3 278 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 C19orf73Q9NVV2 129 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 FBXL17Q9UF56 701 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 HSPB11Q9Y547 144 aa8.54□□□□□ -1.04
CCDC88C-212ENST00000556767 MEGF8Q7Z7M0 2845 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 TRAV2A0A0B4J234 112 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 ZNF98A6NK75 572 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 A8MZ25 164 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 COX7A2P2O60397 106 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 DEFB131AP59861 70 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 LEMD1Q68G75 181 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 APRG1Q8IVJ8 170 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 SBSPONQ8IVN8 264 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 OR2T35Q8NGX2 323 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 UHRF2Q96PU4 802 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 ATP5SQ99766 215 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 SCRT1Q9BWW7 348 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 GGTLC1Q9BX51 225 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 SLC25A39Q9BZJ4 359 aaPredicted RBP8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 ARV1Q9H2C2 271 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 MAP6D1Q9H9H5 199 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 NRN1Q9NPD7 142 aa8.53□□□□□ -1.04
CCDC88C-212ENST00000556767 H3BRN7 92 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 K7EQG2 157 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 MPDU1O75352 247 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 IFNA5P01569 189 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 ZNF688P0C7X2 276 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 LYL1P12980 280 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 GALR1P47211 349 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 PLP1P60201 277 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 B2MP61769 119 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 OPCMLQ14982 345 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 ZNF124Q15973 351 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 Q5BKY6 102 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 PXDC1Q5TGL8 231 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 C10orf113Q5VZT2 155 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 FAM24BQ8N5W8 94 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 ZNF709Q8N972 641 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 SCGB1C1Q8TD33 95 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 SHANK2-AS3Q9BTD1 123 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 SLC25A32Q9H2D1 315 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 SLC39A9Q9NUM3 307 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 PXMP4Q9Y6I8 212 aa8.52□□□□□ -1.05
CCDC88C-212ENST00000556767 FXYD6-FXYD2A0A087WZ82 144 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 LOC102724200A0A096LPH7 203 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RBMY1BA6NDE4 496 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RBMY1EA6NEQ0 496 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RBMY1DP0C7P1 496 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 NHLRC4P0CG21 123 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RPL35AP18077 110 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 ATF4P18848 351 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RPL29P47914 159 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 SNRPD3P62318 126 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 HAGHQ16775 308 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 PSMG4Q5JS54 123 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 PATE2Q6UY27 113 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 LINC00305Q7Z4B0 112 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 INO80EQ8NBZ0 244 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 OR1L4Q8NGR5 311 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 DCANP1Q8TF63 244 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 LINC00052Q96N35 136 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 CITED4Q96RK1 184 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 FAM110AQ9BQ89 295 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 RSG1Q9BU20 258 aa8.51□□□□□ -1.05
CCDC88C-212ENST00000556767 NPCDR1Q9BY65 106 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms