RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 RPL29P47914 159 aaKnown RBP10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 RPL11P62913 178 aaKnown RBP10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 ZNF345Q14585 488 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 DEFB114Q30KQ6 69 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 CD300EQ496F6 205 aaPredicted RBP10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 GRAMD2BQ96HH9 432 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 HYLS1Q96M11 299 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 UHRF2Q96PU4 802 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 RNF2Q99496 336 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 ARPC5LQ9BPX5 153 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 KCNIP2Q9NS61 270 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 PFDN2Q9UHV9 154 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 HIGD1AQ9Y241 93 aa10.63□□□□□ -0.71
VIPAS39-208ENST00000556412 TRRAPQ9Y4A5 3859 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 A0A0D9SG52 128 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 KANTRA0A1W2PQU2 76 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 TAAR5O14804 337 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 PRR20EP86478 221 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 PRR20CP86479 221 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 PRR20DP86480 221 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 PRR20BP86481 221 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 PRR20AP86496 221 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 SAMD5Q5TGI4 173 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 RBPMS2Q6ZRY4 209 aaKnown RBP10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 TMEM231Q9H6L2 316 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 SLC25A22Q9H936 323 aa10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 TECRQ9NZ01 308 aaKnown RBP10.62□□□□□ -0.71
VIPAS39-208ENST00000556412 GUCA2BQ16661 112 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 PARD6GQ9BYG4 376 aaPredicted RBP10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 ARV1Q9H2C2 271 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 RFNGQ9Y644 331 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 IZUMO1RA6ND01 250 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 BCL2L11O43521 198 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 FFAR4Q5NUL3 377 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 C10orf113Q5VZT2 155 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 LEMD1Q68G75 181 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 LCN12Q6JVE5 192 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 TMUB2Q71RG4 321 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 TCF24Q7RTU0 167 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 TMEM61Q8N0U2 210 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 SCRT1Q9BWW7 348 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 VSIRQ9H7M9 311 aa10.61□□□□□ -0.71
VIPAS39-208ENST00000556412 JTBO76095 146 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 S100A7P31151 101 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 NKX2-5P52952 324 aaPredicted RBP10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 PLP1P60201 277 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 GCSAMLQ5JQS6 135 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 PXDC1Q5TGL8 231 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 LAMTOR1Q6IAA8 161 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 PATE2Q6UY27 113 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 OR1L4Q8NGR5 311 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 ZNF471Q9BX82 626 aaPredicted RBP10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 SLC25A39Q9BZJ4 359 aaPredicted RBP10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 SH3BGRL3Q9H299 93 aa10.6□□□□□ -0.71
VIPAS39-208ENST00000556412 ELOA3CA0A087WX78 387 aaPredicted RBP10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 BUB3O43684 328 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 ATP6V0CP27449 155 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 TFPI2P48307 235 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 LGALSLQ3ZCW2 172 aaPredicted RBP10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 LINC00305Q7Z4B0 112 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 S100A7AQ86SG5 101 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 OR8I2Q8N0Y5 310 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 GBGT1Q8N5D6 347 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 TMEM37Q8WXS4 190 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 PFDN5Q99471 154 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 DNAJC4Q9NNZ3 241 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 CYTL1Q9NRR1 136 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 U3KQE9 123 aa10.59□□□□□ -0.71
VIPAS39-208ENST00000556412 ZNF98A6NK75 572 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 WIPF1O43516 503 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 C16orf54Q6UWD8 224 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 OR2K2Q8NGT1 345 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 SHANK2-AS3Q9BTD1 123 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 H3BRN7 92 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 KRTAP10-11P60412 298 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 WFDC3Q8IUB2 231 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 STXBP6Q8NFX7 210 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 GNPNAT1Q96EK6 184 aaPredicted RBP10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 ZNF256Q9Y2P7 627 aaPredicted RBP10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 TIMM9Q9Y5J7 89 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 PKD1L1Q8TDX9 2849 aa10.58□□□□□ -0.72
VIPAS39-208ENST00000556412 HELTA6NFD8 242 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 PRB2P02812 416 aaPredicted RBP10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 GP9P14770 177 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 SIGLEC15Q6ZMC9 328 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 C9orf62Q8N4C0 152 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 GLMPQ8WWB7 406 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 PRR25Q96S07 402 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 SLC25A32Q9H2D1 315 aa10.57□□□□□ -0.72
VIPAS39-208ENST00000556412 DNASE2O00115 360 aaPredicted RBP10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 BEAN1Q3B7T3 259 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 C1orf194Q5T5A4 169 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 FAM78BQ5VT40 261 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 MORN5Q5VZ52 161 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 OR2G3Q8NGZ4 309 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 GATAD1Q8WUU5 269 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 ZMAT5Q9UDW3 170 aaKnown RBP10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 TRAV5A0A0B4J249 113 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 TRAV25A0A0B4J276 109 aa10.56□□□□□ -0.72
VIPAS39-208ENST00000556412 TSPAN4O14817 238 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms