RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RAB5CP51148 216 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 SLURP1P55000 103 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 RAB14P61106 215 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 C10orf113Q5VZT2 155 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 SPSB3Q6PJ21 355 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 ZNF600Q6ZNG1 722 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 LINC00305Q7Z4B0 112 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 SFT2D1Q8WV19 159 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 SCRT1Q9BWW7 348 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 TMPRSS5Q9H3S3 457 aa8.25□□□□□ -1.09
TDP1-211ENST00000555178 IGHV3OR16-13A0A075B7E8 117 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 IGHV3-49A0A0A0MS15 119 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 IGHV3-74A0A0B4J1X5 117 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 MAP1LC3B2A6NCE7 125 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 SEC14L6B5MCN3 397 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 MBP02144 154 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 H2AFB1P0C5Y9 115 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 COMMD1Q8N668 190 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 Q8WTZ3 238 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 CITED1Q99966 193 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 C20orf24Q9BUV8 137 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 MAP1LC3BQ9GZQ8 125 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 DNAJC4Q9NNZ3 241 aa8.24□□□□□ -1.09
TDP1-211ENST00000555178 IGHV3-66A0A0C4DH42 116 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 A0A1W2PPV4 95 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 HYPMO75409 117 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 APOHP02749 345 aaPredicted RBP8.23□□□□□ -1.09
TDP1-211ENST00000555178 PLP1P60201 277 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 SLC7A5P1Q8MH63 180 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 OR11H1Q8NG94 326 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 ACTR3CQ9C0K3 210 aaPredicted RBP8.23□□□□□ -1.09
TDP1-211ENST00000555178 MRPL27Q9P0M9 148 aaKnown RBP8.23□□□□□ -1.09
TDP1-211ENST00000555178 FUT9Q9Y231 359 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 CTXND1A0A1B0GTU2 59 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 NUDT19A8MXV4 375 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 ARL14EPLP0DKL9 152 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 IQCF2Q8IXL9 164 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 GATAD1Q8WUU5 269 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 C4orf3Q8WVX3 66 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 SAT2Q96F10 170 aaPredicted RBP8.23□□□□□ -1.09
TDP1-211ENST00000555178 ZNF503Q96F45 646 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 SLC25A2Q9BXI2 301 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 GAR1Q9NY12 217 aaKnown RBP8.23□□□□□ -1.09
TDP1-211ENST00000555178 HIGD1AQ9Y241 93 aa8.23□□□□□ -1.09
TDP1-211ENST00000555178 TSSC4Q9Y5U2 329 aaPredicted RBP8.23□□□□□ -1.09
TDP1-211ENST00000555178 NOTCH3Q9UM47 2321 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 ZNF320A2RRD8 509 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 GGCTO75223 188 aaKnown RBP8.22□□□□□ -1.09
TDP1-211ENST00000555178 HSPB1P04792 205 aaKnown RBP8.22□□□□□ -1.09
TDP1-211ENST00000555178 FABP1P07148 127 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 PYYP10082 97 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 RHOBP62745 196 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 RELQ04864 619 aaPredicted RBP8.22□□□□□ -1.09
TDP1-211ENST00000555178 DPPA3Q6W0C5 159 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 OR1L4Q8NGR5 311 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 LYPD6BQ8NI32 183 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 FAM167A-AS1Q96KT0 104 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 SLC25A39Q9BZJ4 359 aaPredicted RBP8.22□□□□□ -1.09
TDP1-211ENST00000555178 A0A1B0GUS0 222 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 SCGB2A1O75556 95 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 OR10J4P0C629 311 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 HOXD3P31249 432 aaPredicted RBP8.22□□□□□ -1.09
TDP1-211ENST00000555178 BLOC1S1P78537 153 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 RPEL1Q2QD12 228 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 MBD3L1Q8WWY6 194 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 ATP6V0BQ99437 205 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 PFDN5Q99471 154 aa8.22□□□□□ -1.09
TDP1-211ENST00000555178 ELOA3CA0A087WX78 387 aaPredicted RBP8.21□□□□□ -1.09
TDP1-211ENST00000555178 H3BRN7 92 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 H3BTX0 84 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 STAG3L2P0CL84 134 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 STAG3L3P0CL85 134 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 SYNJ2BPP57105 145 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 SRSF3P84103 164 aaKnown RBP8.21□□□□□ -1.09
TDP1-211ENST00000555178 TM4SF20Q53R12 229 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 FAM209BQ5JX69 171 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 OR1N2Q8NGR9 330 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 LRRC20Q8TCA0 184 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 TMEM158Q8WZ71 300 aa8.21□□□□□ -1.09
TDP1-211ENST00000555178 NDUFA4O00483 81 aa8.21□□□□□ -1.1
TDP1-211ENST00000555178 OR7C2O60412 319 aa8.21□□□□□ -1.1
TDP1-211ENST00000555178 TMEM190Q8WZ59 177 aa8.21□□□□□ -1.1
TDP1-211ENST00000555178 DLX4Q92988 240 aaPredicted RBP8.21□□□□□ -1.1
TDP1-211ENST00000555178 SHANK2-AS3Q9BTD1 123 aa8.21□□□□□ -1.1
TDP1-211ENST00000555178 RABAC1Q9UI14 185 aa8.21□□□□□ -1.1
TDP1-211ENST00000555178 ZNF98A6NK75 572 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 CCL24O00175 119 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 C8orf88P0DMB2 117 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 ADAMTSL5Q6ZMM2 481 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 COMMD7Q86VX2 200 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 MRPL32Q9BYC8 188 aaKnown RBP8.2□□□□□ -1.1
TDP1-211ENST00000555178 TMEM231Q9H6L2 316 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 SORL1Q92673 2214 aa8.2□□□□□ -1.1
TDP1-211ENST00000555178 UBE2G2P60604 165 aa8.19□□□□□ -1.1
TDP1-211ENST00000555178 FHL3Q13643 280 aa8.19□□□□□ -1.1
TDP1-211ENST00000555178 RARRES2Q99969 163 aa8.19□□□□□ -1.1
TDP1-211ENST00000555178 ZNF747Q9BV97 191 aa8.19□□□□□ -1.1
TDP1-211ENST00000555178 TECRQ9NZ01 308 aaKnown RBP8.19□□□□□ -1.1
TDP1-211ENST00000555178 GNG13Q9P2W3 67 aa8.19□□□□□ -1.1
TDP1-211ENST00000555178 LINC00862A6NCI5 91 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms