RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 DOK5Q9P104 306 aa12.17□□□□□ -0.46
CHMP1A-209ENST00000550872 SLC45A2Q9UMX9 530 aa12.17□□□□□ -0.46
CHMP1A-209ENST00000550872 HSPB11Q9Y547 144 aa12.17□□□□□ -0.46
CHMP1A-209ENST00000550872 OR4C46A6NHA9 309 aa12.16□□□□□ -0.46
CHMP1A-209ENST00000550872 BUB3O43684 328 aa12.16□□□□□ -0.46
CHMP1A-209ENST00000550872 TFPI2P48307 235 aa12.16□□□□□ -0.46
CHMP1A-209ENST00000550872 PAFAH1B2P68402 229 aa12.16□□□□□ -0.46
CHMP1A-209ENST00000550872 GBGT1Q8N5D6 347 aa12.16□□□□□ -0.46
CHMP1A-209ENST00000550872 OR2T35Q8NGX2 323 aa12.16□□□□□ -0.46
CHMP1A-209ENST00000550872 HELTA6NFD8 242 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 DNASE2O00115 360 aaPredicted RBP12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 HYPMO75409 117 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 OR5G3P0C626 314 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 FGF7P21781 194 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 WFDC3Q8IUB2 231 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 STPG3Q8N7X2 389 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 CHAC2Q8WUX2 184 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 GLMPQ8WWB7 406 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 SMIM3Q9BZL3 60 aa12.15□□□□□ -0.46
CHMP1A-209ENST00000550872 S100A7P31151 101 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 AP2S1P53680 142 aaPredicted RBP12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 PLP1P60201 277 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 MIC13Q5XKP0 118 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 Q6ZNX1 250 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 STXBP6Q8NFX7 210 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 ATP5SQ99766 215 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 ARL6Q9H0F7 186 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 MS4A6AQ9H2W1 248 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 HIGD1AQ9Y241 93 aa12.14□□□□□ -0.47
CHMP1A-209ENST00000550872 FXYD6-FXYD2A0A087WZ82 144 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 OR11H12B2RN74 326 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 MPDU1O75352 247 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 C1orf194Q5T5A4 169 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 PXDC1Q5TGL8 231 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 SIGLEC15Q6ZMC9 328 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 OR8I2Q8N0Y5 310 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 GGTLC1Q9BX51 225 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 FBXL17Q9UF56 701 aa12.13□□□□□ -0.47
CHMP1A-209ENST00000550872 ZNF98A6NK75 572 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 IFNA5P01569 189 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 IGHV4-30-4P0DP06 118 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 RPL29P47914 159 aaKnown RBP12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 OPCMLQ14982 345 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 Q6ZRG5 221 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 S100A7AQ86SG5 101 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 DEFB125Q8N687 156 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 INO80EQ8NBZ0 244 aaPredicted RBP12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 SLC25A39Q9BZJ4 359 aaPredicted RBP12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 WDR61Q9GZS3 305 aaKnown RBP12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 WFDC10AQ9H1F0 79 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 ARV1Q9H2C2 271 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 TUBA4BQ9H853 241 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 SLC25A22Q9H936 323 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 UBQLN2Q9UHD9 624 aa12.12□□□□□ -0.47
CHMP1A-209ENST00000550872 TRAV2A0A0B4J234 112 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 COX7A2P2O60397 106 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 CMC4P56277 68 aaPredicted RBP12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 B2MP61769 119 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PRR20EP86478 221 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PRR20CP86479 221 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PRR20DP86480 221 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PRR20BP86481 221 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PRR20AP86496 221 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PATE2Q6UY27 113 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 ZNF709Q8N972 641 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 SCGB1C1Q8TD33 95 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 AQP10Q96PS8 301 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 UHRF2Q96PU4 802 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 SHANK2-AS3Q9BTD1 123 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 NPCDR1Q9BY65 106 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 WFDC1Q9HC57 220 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 SLC39A9Q9NUM3 307 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 C19orf73Q9NVV2 129 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 PXMP4Q9Y6I8 212 aa12.11□□□□□ -0.47
CHMP1A-209ENST00000550872 SMLR1H3BR10 107 aa12.1□□□□□ -0.47
CHMP1A-209ENST00000550872 H3BRN7 92 aa12.1□□□□□ -0.47
CHMP1A-209ENST00000550872 LEMD1Q68G75 181 aa12.1□□□□□ -0.47
CHMP1A-209ENST00000550872 SCRT1Q9BWW7 348 aa12.1□□□□□ -0.47
CHMP1A-209ENST00000550872 DNAJC4Q9NNZ3 241 aa12.1□□□□□ -0.47
CHMP1A-209ENST00000550872 NRN1Q9NPD7 142 aa12.1□□□□□ -0.47
CHMP1A-209ENST00000550872 ELOA3CA0A087WX78 387 aaPredicted RBP12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 A8MZ25 164 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 C17orf112F2Z3M2 114 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 G3V3Q6 166 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 K7EQG2 157 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 FRMD6-AS1P0C7T7 363 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 GALR1P47211 349 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 ODF3L2Q3SX64 289 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 C10orf113Q5VZT2 155 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 OR1L4Q8NGR5 311 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 TMEM37Q8WXS4 190 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 SLC25A32Q9H2D1 315 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 SRD5A3Q9H8P0 318 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 TNFSF18Q9UNG2 199 aa12.09□□□□□ -0.47
CHMP1A-209ENST00000550872 DNAH3Q8TD57 4116 aa12.08□□□□□ -0.48
CHMP1A-209ENST00000550872 LINC00305Q7Z4B0 112 aa12.08□□□□□ -0.48
CHMP1A-209ENST00000550872 DCANP1Q8TF63 244 aa12.08□□□□□ -0.48
CHMP1A-209ENST00000550872 GPR82Q96P67 336 aa12.08□□□□□ -0.48
CHMP1A-209ENST00000550872 PFDN5Q99471 154 aa12.08□□□□□ -0.48
CHMP1A-209ENST00000550872 B9D2Q9BPU9 175 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms