RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 TMEM61Q8N0U2 210 aa10.38□□□□□ -0.75
PTCH1-213ENST00000546820 MGST2Q99735 147 aa10.38□□□□□ -0.75
PTCH1-213ENST00000546820 AURKAIP1Q9NWT8 199 aaPredicted RBP10.38□□□□□ -0.75
PTCH1-213ENST00000546820 FBXL17Q9UF56 701 aa10.38□□□□□ -0.75
PTCH1-213ENST00000546820 SORL1Q92673 2214 aa10.38□□□□□ -0.75
PTCH1-213ENST00000546820 ELOA3CA0A087WX78 387 aaPredicted RBP10.37□□□□□ -0.75
PTCH1-213ENST00000546820 C17orf112F2Z3M2 114 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 BUB3O43684 328 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 OR5G3P0C626 314 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 C16orf54Q6UWD8 224 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 PRR25Q96S07 402 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 SPAG8Q99932 426 aaPredicted RBP10.37□□□□□ -0.75
PTCH1-213ENST00000546820 NEURL2Q9BR09 285 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 SMIM3Q9BZL3 60 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 ARL6Q9H0F7 186 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 KCNIP2Q9NS61 270 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 HIGD1AQ9Y241 93 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 SELENOKQ9Y6D0 94 aa10.37□□□□□ -0.75
PTCH1-213ENST00000546820 NBEAL1Q6ZS30 2694 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 OR4C46A6NHA9 309 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 DNASE2O00115 360 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-213ENST00000546820 PRB2P02812 416 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-213ENST00000546820 CMC4P56277 68 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-213ENST00000546820 DEFB121Q5J5C9 76 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 FAM90A2PQ658T7 463 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 OR1L4Q8NGR5 311 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 GGTLC1Q9BX51 225 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 WDR61Q9GZS3 305 aaKnown RBP10.36□□□□□ -0.75
PTCH1-213ENST00000546820 DNAJC4Q9NNZ3 241 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 TNFSF18Q9UNG2 199 aa10.36□□□□□ -0.75
PTCH1-213ENST00000546820 hCG_2014768A0A024R1R8 64 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 IGKV3-7A0A075B6H7 116 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 COX7A2P2O60397 106 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 B2MP61769 119 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 ZNF266Q14584 549 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 MIC13Q5XKP0 118 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 OR8I2Q8N0Y5 310 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 STPG3Q8N7X2 389 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 GPR82Q96P67 336 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 NPCDR1Q9BY65 106 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 PARD6GQ9BYG4 376 aaPredicted RBP10.35□□□□□ -0.75
PTCH1-213ENST00000546820 DOK5Q9P104 306 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 NOTCH1P46531 2555 aa10.35□□□□□ -0.75
PTCH1-213ENST00000546820 ZNF98A6NK75 572 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 ARPC5O15511 151 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PRR20EP86478 221 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PRR20CP86479 221 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PRR20DP86480 221 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PRR20BP86481 221 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PRR20AP86496 221 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 OPCMLQ14982 345 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 C10orf113Q5VZT2 155 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 SIGLEC15Q6ZMC9 328 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 GBGT1Q8N5D6 347 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 MRAPQ8TCY5 172 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 GLMPQ8WWB7 406 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PFDN5Q99471 154 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 SLC25A39Q9BZJ4 359 aaPredicted RBP10.34□□□□□ -0.75
PTCH1-213ENST00000546820 MFFQ9GZY8 342 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 ARV1Q9H2C2 271 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 SLC39A9Q9NUM3 307 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 PXMP4Q9Y6I8 212 aa10.34□□□□□ -0.75
PTCH1-213ENST00000546820 BORCS7-ASMTA0A0B4J1R7 106 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 TRAV2A0A0B4J234 112 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 HMSDA8MTL9 139 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 SMLR1H3BR10 107 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 TAAR5O14804 337 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 GALR1P47211 349 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 CD81P60033 236 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 WFDC3Q8IUB2 231 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 STXBP6Q8NFX7 210 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 ST6GAL2Q96JF0 529 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 SHANK2-AS3Q9BTD1 123 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 MS4A6AQ9H2W1 248 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 SLC25A22Q9H936 323 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 SMAD5-AS1Q9Y6J3 95 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 CMYA5Q8N3K9 4069 aa10.33□□□□□ -0.76
PTCH1-213ENST00000546820 RNF222A6NCQ9 220 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 G3V3Q6 166 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 K7EIL1 84 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 TFPI2P48307 235 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 PATE2Q6UY27 113 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 LINC00305Q7Z4B0 112 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 AKAP14Q86UN6 197 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 TCTE3Q8IZS6 198 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 Q8N1Y9 231 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 GATAD1Q8WUU5 269 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 WFDC1Q9HC57 220 aa10.32□□□□□ -0.76
PTCH1-213ENST00000546820 A0A0D9SG52 128 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 H3BRN7 92 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 RPL7P18124 248 aaKnown RBP10.31□□□□□ -0.76
PTCH1-213ENST00000546820 SAMD13Q5VXD3 122 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 UHRF2Q96PU4 802 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 FAM110AQ9BQ89 295 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 TUBA4BQ9H853 241 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 NRN1Q9NPD7 142 aa10.31□□□□□ -0.76
PTCH1-213ENST00000546820 OR11H12B2RN74 326 aa10.3□□□□□ -0.76
PTCH1-213ENST00000546820 JTBO76095 146 aa10.3□□□□□ -0.76
PTCH1-213ENST00000546820 CD7P09564 240 aa10.3□□□□□ -0.76
PTCH1-213ENST00000546820 MEOX2P50222 304 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms