RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MGPP08493 103 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 PF4V1P10720 104 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 MRPL16Q9NX20 251 aaKnown RBP11.68□□□□□ -0.54
LIMS1-215ENST00000544547 TRBV6-6A0A0A6YYG2 114 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 FAM71F2Q6NXP2 309 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 OR4X2Q8NGF9 303 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 LYRM7Q5U5X0 104 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 ZNF479Q96JC4 524 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 NCOR1P1Q9H4R4 102 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 IGHV3-35A0A0C4DH35 117 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 CD69Q07108 199 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 ADAMTSL5Q6ZMM2 481 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 FOXL2NBQ6ZUU3 175 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 TEX45Q8NA69 505 aa11.67□□□□□ -0.54
LIMS1-215ENST00000544547 TSSC4Q9Y5U2 329 aaPredicted RBP11.67□□□□□ -0.54
LIMS1-215ENST00000544547 SAA1P0DJI8 122 aaPredicted RBP11.67□□□□□ -0.54
LIMS1-215ENST00000544547 APOMO95445 188 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 Q6ZPA2 131 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 Q6ZT83 130 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 IFI27L1Q96BM0 104 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 IL4P05112 153 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 LCNL1Q6ZST4 164 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 ORMDL3Q8N138 153 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 DYNLRB2Q8TF09 96 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 COQ2Q96H96 371 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 IDI2-AS1Q9NZ38 188 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 IGHV1-24A0A0C4DH33 117 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 ETDBQ3ZM63 59 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 ANKRD39Q53RE8 183 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 DEFB125Q8N687 156 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 KBTBD11-OT1A0A1B0GTJ5 212 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 WDR82Q6UXN9 313 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 ATP5L2Q7Z4Y8 100 aa11.66□□□□□ -0.54
LIMS1-215ENST00000544547 SOX21Q9Y651 276 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-215ENST00000544547 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-215ENST00000544547 AZU1P20160 251 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 TAX1BP3O14907 124 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 NCR2O95944 276 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 MEF2CQ06413 473 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-215ENST00000544547 Q0VFX4 171 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 GTSCR1Q86UQ5 136 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 PROK2Q9HC23 129 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 TP53TG3Q9ULZ0 132 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 RNF114Q9Y508 228 aa11.65□□□□□ -0.54
LIMS1-215ENST00000544547 SONP18583 2426 aaKnown RBP11.65□□□□□ -0.55
LIMS1-215ENST00000544547 FAM106CPP0CH98 169 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 CRIP3Q6Q6R5 217 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 CENPVQ7Z7K6 275 aaPredicted RBP11.64□□□□□ -0.55
LIMS1-215ENST00000544547 UPK2O00526 184 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 NDUFA3O95167 84 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 HBDP02042 147 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 TTC32Q5I0X7 151 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 TMEM78Q5T7P6 136 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 FAM216BQ8N7L0 139 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 TMEM105Q8N8V8 129 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 OR11H12B2RN74 326 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 GLRXP35754 106 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 B3GALT5-AS1P59052 145 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 NRN1LQ496H8 165 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 RASL11AQ6T310 242 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 EXOC3-AS1Q8N2X6 119 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 OR11H1Q8NG94 326 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 OR11H2Q8NH07 326 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 C9orf118A6NHY6 69 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 D6R8Y8 96 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 NPIPB11E5RHQ5 1161 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 TMPRSS3P57727 454 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 GAGE13Q4V321 117 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 ZNF295-AS1Q8N0V1 137 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 Q8NFD4 153 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 FMC1Q96HJ9 113 aa11.64□□□□□ -0.55
LIMS1-215ENST00000544547 PRB3Q04118 309 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-215ENST00000544547 FAM27E3Q08E93 113 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 OR4C13Q8NGP0 309 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 IFI27P40305 119 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-215ENST00000544547 LEPP41159 167 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 CACNG8Q8WXS5 425 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 MRPL20Q9BYC9 149 aaKnown RBP11.63□□□□□ -0.55
LIMS1-215ENST00000544547 MBNL3Q9NUK0 354 aaKnown RBP11.63□□□□□ -0.55
LIMS1-215ENST00000544547 PRRC2CQ9Y520 2896 aaKnown RBP11.63□□□□□ -0.55
LIMS1-215ENST00000544547 IGHV3OR16-8A0A075B7F1 116 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 PRCDQ00LT1 54 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 OR9G4Q8NGQ1 327 aa11.63□□□□□ -0.55
LIMS1-215ENST00000544547 FGF23Q9GZV9 251 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-215ENST00000544547 CECR9P0C854 216 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 RNFT1Q5M7Z0 435 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 ZFHX2Q9C0A1 2572 aaPredicted RBP11.62□□□□□ -0.55
LIMS1-215ENST00000544547 EML5Q05BV3 1969 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 EVI2AP22794 236 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 PPIFP30405 207 aaKnown RBP11.62□□□□□ -0.55
LIMS1-215ENST00000544547 C16orf92Q96LL3 132 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 SMIM27A0A1W2PRY6 76 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 DLX1P56177 255 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 HERVK_113P61574 105 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 BEX4Q9NWD9 120 aaPredicted RBP11.62□□□□□ -0.55
LIMS1-215ENST00000544547 J3QW42 95 aa11.62□□□□□ -0.55
LIMS1-215ENST00000544547 TMEM238LA0A1B0GVL6 79 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 ZNF503-AS2A6NEH8 195 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 A6NJY4 79 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 TOMM40O96008 361 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms