RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 RPRMLQ8N4K4 120 aa12.7□□□□□ -0.38
CHD4-210ENST00000544040 RPL32P62910 135 aaKnown RBP12.69□□□□□ -0.38
CHD4-210ENST00000544040 MRAPQ8TCY5 172 aa12.69□□□□□ -0.38
CHD4-210ENST00000544040 MARF1Q9Y4F3 1742 aaKnown RBP12.69□□□□□ -0.38
CHD4-210ENST00000544040 CHAC1Q9BUX1 264 aa12.69□□□□□ -0.38
CHD4-210ENST00000544040 SRSF7Q16629 238 aaKnown RBP eCLIP12.69□□□□□ -0.382e-7■□□□□ 8.9
CHD4-210ENST00000544040 PYY3Q5JQD4 70 aa12.69□□□□□ -0.38
CHD4-210ENST00000544040 SSC4DQ8WTU2 575 aa12.69□□□□□ -0.38
CHD4-210ENST00000544040 MESP1Q9BRJ9 268 aa12.69□□□□□ -0.38
CHD4-210ENST00000544040 CITED1Q99966 193 aa12.69□□□□□ -0.38
CHD4-210ENST00000544040 TMEM200BQ69YZ2 307 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 SUMO4Q6EEV6 95 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 PSCAO43653 123 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 RPL36AP83881 106 aaKnown RBP12.68□□□□□ -0.38
CHD4-210ENST00000544040 STPG4Q8N801 248 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 RPL36ALQ969Q0 106 aaKnown RBP12.68□□□□□ -0.38
CHD4-210ENST00000544040 FAM90A9PA6NNJ1 464 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 AMN1Q8IY45 258 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 ANAPC10Q9UM13 185 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 ZNF664Q8N3J9 261 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 RNASE6Q93091 150 aaKnown RBP12.68□□□□□ -0.38
CHD4-210ENST00000544040 ICE1Q9Y2F5 2266 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 LINC00205P59089 165 aa12.68□□□□□ -0.38
CHD4-210ENST00000544040 ZC2HC1BQ5TFG8 222 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 RPP25LQ8N5L8 163 aaKnown RBP12.67□□□□□ -0.38
CHD4-210ENST00000544040 TIMM21Q9BVV7 248 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 J3QRE1 110 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 VCYO14598 125 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 ANKRD36A6QL64 1941 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 IGKV1-27A0A075B6S5 117 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 FOXG1P55316 489 aaPredicted RBP12.67□□□□□ -0.38
CHD4-210ENST00000544040 SUPT4H1P63272 117 aaKnown RBP12.67□□□□□ -0.38
CHD4-210ENST00000544040 FOXF2Q12947 444 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 C9orf153Q5TBE3 101 aa12.67□□□□□ -0.38
CHD4-210ENST00000544040 RSPO3Q9BXY4 272 aaPredicted RBP12.67□□□□□ -0.38
CHD4-210ENST00000544040 METRNQ9UJH8 293 aa12.66□□□□□ -0.38
CHD4-210ENST00000544040 LYPD3O95274 346 aa12.66□□□□□ -0.38
CHD4-210ENST00000544040 PRIMA1Q86XR5 153 aa12.66□□□□□ -0.38
CHD4-210ENST00000544040 IGHV1-3A0A0C4DH29 117 aa12.66□□□□□ -0.38
CHD4-210ENST00000544040 ZNF114Q8NC26 417 aa12.66□□□□□ -0.38
CHD4-210ENST00000544040 TUBGCP6Q96RT7 1819 aa12.66□□□□□ -0.38
CHD4-210ENST00000544040 EREGO14944 169 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 BRD3OSQ6XYD6 125 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 NTF4P34130 210 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 TCF15Q12870 199 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 REG4Q9BYZ8 158 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 NEUROG3Q9Y4Z2 214 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 DEFB121Q5J5C9 76 aa12.65□□□□□ -0.38
CHD4-210ENST00000544040 MTCL1Q9Y4B5 1905 aaKnown RBP12.64□□□□□ -0.39
CHD4-210ENST00000544040 MYMXA0A1B0GTQ4 84 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 IGKV1-5P01602 117 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 KLF12Q9Y4X4 402 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 A0A1B0GWJ7 208 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 MRPL14Q6P1L8 145 aaKnown RBP12.64□□□□□ -0.39
CHD4-210ENST00000544040 RASL11AQ6T310 242 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 CD177Q8N6Q3 437 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 FBLN5Q9UBX5 448 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 MRPS18CQ9Y3D5 142 aaKnown RBP12.64□□□□□ -0.39
CHD4-210ENST00000544040 RGPD3A6NKT7 1758 aaPredicted RBP12.64□□□□□ -0.39
CHD4-210ENST00000544040 PSPNO60542 156 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 IGHV1-8P0DP01 117 aa12.64□□□□□ -0.39
CHD4-210ENST00000544040 TNFRSF14Q92956 283 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 PLSCR4Q9NRQ2 329 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 A0A1B0GUS0 222 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 LY6DQ14210 128 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 ZNF329Q86UD4 541 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 LINC00479Q96M42 142 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 MLANAQ16655 118 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 PRSS57Q6UWY2 283 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 DNAJC30Q96LL9 226 aa12.63□□□□□ -0.39
CHD4-210ENST00000544040 LINC01559Q495D7 138 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 ZNF581Q9P0T4 197 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 CSRP2Q16527 193 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 ZNF672Q499Z4 452 aaPredicted RBP12.62□□□□□ -0.39
CHD4-210ENST00000544040 TRGV9Q99603 122 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 LINC01549A6NIU2 74 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 RNF144BQ7Z419 303 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 A0A1B0GW64 132 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 FAM231BA6NCW3 169 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 CRYGSP22914 178 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 CFHR3Q02985 330 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 OVOL2Q9BRP0 275 aa12.62□□□□□ -0.39
CHD4-210ENST00000544040 STRCP1A6NGW2 1772 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 C5orf63A6NC05 138 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 LINC00473A8K010 186 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 H3BMM0 161 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 UBE2WQ96B02 151 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 LINC00477Q96M19 166 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 DEFB130BP0DP73 79 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 DEFB130AP0DP74 79 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 TRAV1-1A0A0B4J248 108 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 KNCNA6PVL3 124 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 H0YJW9 148 aa12.61□□□□□ -0.39
CHD4-210ENST00000544040 RBMY1FQ15415 496 aaKnown RBP12.6□□□□□ -0.39
CHD4-210ENST00000544040 NABP1Q96AH0 204 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 CD5LO43866 347 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 SS18Q15532 418 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 LHFPL1Q86WI0 220 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 ZNF318Q5VUA4 2279 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 LILRA1O75019 489 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 303.2 ms